Job Description P23893 Confidence 38.47% Date Thu Jan 5 11:40:26 GMT 2012 Rank 337 Aligned Residues 252 % Identity 12% Template c2ppgB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:putative isomerase; PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti Resolution 2.49 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	L	Y	D	V	D	G	K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S
Query Conservation
Alig confidence												.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		V	R	I	E	T	E	N	G	A	V	.	.	.	.	.	.	G	W	G	E	T	Y	G	L	V	A	P	R	A	T	X	E	I	I	D	D	L	L	A	D	F	T	I	G	R	D	P	F	D	A	A	A	I	H	D	D	L	Y	D	L	X	R	V	R	G	Y	T	G	G	F	Y	V	D	A	L	A	A	I	D	I
Template Known Secondary structure							T	T				.	.	.	.	.	.								S	S												T	T	G	G	G	T	T	T			G	G	G											T	T	G	G	G	T		S	S
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.													130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.												.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	R	L	A	R	G	F	.	.	.	.	.	.	.	.	.	.	.	.	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	.	.	.	.	.	.	.	.	.	.	.	A	K	Y	T	L	T
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	W	D	L	A	G	K	L	A	G	L	P	V	C	K	L	L	G	G	Q	R	R	D	R	I	A	A	Y	I	S	G	L	P	E	D	T	R	A	K	R	A	E	L	A	A	A	W	Q	A	K	G	F	S	S	F	K	F	A	S	P	V	A	K	E	X	E	I	L	R	E	R	L	G	P	A	V	R	I	A
Template Known Secondary structure												T	S	B	G	G	G	G	T	T					S												S	S													T	T	T																							S	S	S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		179	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		C	T	Y	N	.	.	.	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G
Query Conservation						.	.	.
Alig confidence						.	.	.																									.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.																																							.	.
Template Sequence		C	D	X	H	W	A	H	T	A	S	E	A	V	A	L	I	K	A	X	E	P	H	G	L	W	F	A	E	A	P	V	.	.	.	.	.	.	.	.	.	R	T	E	D	I	D	G	L	A	R	V	A	A	S	V	S	T	A	I	A	V	G	E	E	W	R	T	V	H	D	X	V	P	R	V	A	R	R	.	.
Template Known Secondary structure						S															G	G	G									S	.	.	.	.	.	.	.	.	.		T	T										T	T		S	S						T	T			S	G	G	G	T						T	T	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.																																							.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.										.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q
Query Conservation
Alig confidence		.												.			.	.	.	.	.
Template Conservation		.												.			.	.	.	.	.
Template Sequence		.	A	L	A	I	V	Q	P	E	X	G	H	.	K	G	.	.	.	.	.	I	T	Q	F	X	R	I	G	A	Y	A	H	V	H	H	I	K	V	I	P	H	A	T	I	G	A	G	I	F	L	A	A	S	L	Q	A	S	A	A	L	A	N
Template Known Secondary structure		.			S									.			.	.	.	.	.														T	T									S	S		S														T	T
Template Predicted Secondary structure		.												.			.	.	.	.	.
Template SS confidence
			283	.	.	.	.	.	.	290	.	.	.		.	.						.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions