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Job DescriptionP23893
Confidence99.86%DateThu Jan 5 11:40:26 GMT 2012
Rank179Aligned Residues317
% Identity15%Templatec2po3B_
PDB info PDB header:transferaseChain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6970.........80.........90.........100.........110.........120.........130.........140........
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Query Sequence  PAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADC
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Template Sequence  ARLYERLDRALDSQW. LSNGGPLVREFEERVAGLA. GVRHAVATCNATAGLQLLAHAA. . . GLTGEVIMPSMTFAATPHA
Template Known Secondary structure  T
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SSS
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SSSS
T
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   2032.......2040...... ...2050.........2060..... ....2070.........2080....... ..2090.........2100......
 
   149150.........160.........170.........180.........190.........200.........210.........220........
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Query Sequence  LLVKAGSGALTLGQPNSPGVPADFAKYTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCD
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Template Sequence  LRWIGLTPVFADIDPDTGNL. . . . . . . . . . . . . . DPDQVAAAVTPR. . . . . . TSAVVGVHLWGRPCA. . . . ADQLRKVAD
Template Known Secondary structure  TT

B
TTTSSB..............
STT

TT......
GGG



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   2107..2110.........2120...... ...2130........ .2140.........2150... ......2160..
 
   229230.........240... ......250.........260.........270.........280...... ...290.........300
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Query Sequence  EFGALLIIDEVMTGF. RVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDAL. . . . . . . APTGPVYQAGTLSG
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Template Sequence  EHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNA
Template Known Secondary structure  T

TT
TT
TTTTSSSSS

TTSSS

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TBTTTT
TT

TT


B
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   2163......2170.........2180.........2190.........2200.........2210.........2220.........2230.........2240..
 
   301........310.........320.........330.........340.. .......350.........360.........370........
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Query Sequence  NPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEA. . GIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVER
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Template Sequence  KMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIH. . . . . . . . . . .
Template Known Secondary structure  B

T
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TT

GGGGSB





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   2243......2250.........2260.........2270.........2280.........2290.........2300.........2310.
 
   379380.........390..... ....400.........410.........420.....
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Query Sequence  FKRFFHMMLDEGVYLAP. . . . . . . . . . . . . . . . . . . . . . . . . . . SAFEAGFMSVAHSMEDINNTIDAARRVFAK
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Template Sequence  RDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATR
Template Known Secondary structure  TT
B
TT
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GGGSTTTTTS




TT

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   2312.......2320.........2330.........2340.........2350.........2360.........2370.........2380.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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