Job Description P23893 Confidence 99.93% Date Thu Jan 5 11:40:26 GMT 2012 Rank 121 Aligned Residues 327 % Identity 15% Template c2ogeC_ PDB info PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form Resolution 2.05 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	A	R	G	F	T	G
Query Conservation
Alig confidence													.	.	.	.	.																					.	.															.
Template Conservation													.	.	.	.	.																					.	.															.
Template Sequence		F	L	D	L	K	A	A	Y	E	E	L	.	.	.	.	.	R	A	E	T	D	A	A	I	A	R	V	L	D	S	G	R	Y	L	L	G	.	.	P	E	L	E	G	F	E	A	E	F	A	A	Y	C	.	E	T	D	H	A	V	G	V	N	S	G	M	D	A	L	Q	L	A	L	R	G	L	G	I	G	P	G
Template Known Secondary structure		S										T	.	.	.	.	.															T			S	S	S	.	.														T	.	T	S	S						S													T	T			T	T
Template Predicted Secondary structure													.	.	.	.	.																					.	.															.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N
Query Conservation
Alig confidence		.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation		.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		.	D	E	V	I	V	P	S	H	T	Y	I	A	S	W	L	A	V	S	A	T	G	A	T	P	V	P	V	E	P	H	E	D	H	P	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	L	L	V	E	K	A	I	T	P	R	.	.	.	.	.	.	T	R	A	L	L	P	V	H	L	Y	G
Template Known Secondary structure		.							S	S	S										T	T	T								B		S	S	S	S	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G			S	S	.	.	.	.	.	.							B		G	G	G
Template Predicted Secondary structure		.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
			84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.															120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																		.																																												.	.	.	.
Query SS confidence																																		.																																												.	.	.	.
Query Sequence		C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	.	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	.	.	.	.
Query Conservation																																		.																																												.	.	.	.
Alig confidence						.	.	.	.																									.																																												.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		H	P	A	D	.	.	.	.	M	D	A	L	R	E	L	A	D	R	H	G	L	H	I	V	E	D	A	A	Q	A	H	G	A	R	Y	R	G	R	R	I	G	A	G	S	S	V	A	A	F	S	F	Y	P	G	N	L	G	C	F	G	D	G	G	A	V	V	T	G	D	P	E	L	A	E	R	L	R	M	L	R
Template Known Secondary structure						.	.	.	.											T	T								T	T		T	T				T	T			T	T		T	T															S	S								S												T
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		143	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
					287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	G	G	M	F	G	I	F	F	T	D	A	E
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		N	Y	G	S	R	Q	K	Y	S	H	E	T	K	G	T	N	S	R	L	D	E	M	Q	A	A	V	L	R	I	R	L	A	H	L	D	S	W	N	G	R	R	S	A	L	A	A	E	Y	L	S	G	L	A	G	L	P	G	I	G	L	P	V	T	A	P	D	T	D	P	V	W	H	L	F	T	V	R	T	E	R
Template Known Secondary structure		B	T	T		S	B	T	T	B		S	S				B																	T																			T	T	T		T	T	S	B						T	T						S							T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.																														.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	E	L	R	S	H	L	D	A	R	G	I	D	T	L	T	H	Y	P	V	P	V	H	L	S	P	A	Y	A	G	E	A	P	P	E	G	S	L	P	R	A	E	S	F	A	R	Q	V	L	S	L	P	I	G	P	H	L	E	R	P	Q	A	L	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	B			B		S		S	S		G	G	G	S	G	G	G	T	T	T	S			T	T	S																	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	D	A	A	R	R	V	F	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	D	A	V	R	E	W	A	E	R	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions