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Job DescriptionP23893
Confidence99.94%DateThu Jan 5 11:40:26 GMT 2012
Rank102Aligned Residues336
% Identity13%Templatec2o1bA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   48.50.........60.........70.........80.. .......90.........100.... .....110........
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Query Sequence  DGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERG. LSFGAPTEMEVKMAQLVTELVP. . . . . . . . TMDMVRMVNSGTEA
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Template Sequence  GPLPLINXAVGIPDGPT. . . PQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG
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   25....30.........40. ........50.........60.........70.........80.........90.........100.
 
   119120.........130.........140.........150.........160.........170.........180.........190........
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Query Sequence  TMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCTYNDLASVRAAFEQYPQEI
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Template Sequence  LVAVPTCV. . INPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLP. . . . . . . . . . . . . . DWSKVDSQII. . . . DK
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   102....... 110.........120.........130.........140......... 150......... 160.
 
   199200.........210.........220.........230.........240....... ..250.........260........ .270..
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Query Sequence  ACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL. . . . . AGAQDYYGVVPDLTCLGKIIG. GGMP
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Template Sequence  TKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNXSGFR
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GGGSTTSTTTTT
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   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   273......280.........290.........300.........310.........320.........330.........340.........350..
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Query Sequence  VGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVG
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Template Sequence  VGFAVGNKDXIQALKK. . . . . YQTHTNAGXFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAXLAKADLPFVHAKGG
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   242.......250....... ..260.........270.........280.........290.........300.........310......
 
   353......360.........370.........380......... 390...... ...400.........410.........420.....
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Query Sequence  GMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDE. GVYLAPS. . . . . . AFEAGFMSVAHSMEDINNTIDAARRVFAK
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Template Sequence  IYVWLETPPGYD. . . . . . . . . . . . . . SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYL
Template Known Secondary structure  S

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SGGG
GGGTT

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TTGGGGG
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   317..320........ .330.........340.........350.........360.........370.........380..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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