Job Description P23893 Confidence 99.83% Date Thu Jan 5 11:40:26 GMT 2012 Rank 198 Aligned Residues 291 % Identity 16% Template c2nmpC_ PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine gamma-lyase; PDBTitle: crystal structure of human cystathionine gamma lyase Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	F	G	A	P	T	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A	T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G
Query Conservation
Alig confidence																								.																						.	.	.																																.	.
Template Conservation																								.																						.	.	.																																.	.
Template Sequence		F	E	Y	S	R	S	G	N	P	T	R	N	C	L	E	K	A	V	A	A	L	D	.	G	A	K	Y	C	L	A	F	A	S	G	L	A	A	T	V	T	I	T	H	L	.	.	.	L	K	A	G	D	Q	I	I	C	M	D	D	V	Y	G	G	T	N	R	Y	F	R	Q	V	A	S	E	F	G	L	K	.	.
Template Known Secondary structure				B	G	G	G																T	.	T		S						S	S										T	T	.	.	.	S		T	T							S	S												T	G	G	G	T	T			.	.
Template Predicted Secondary structure																								.																						.	.	.																																.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q	E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	.	A	L	L	I	I	D	E	V	M
Query Conservation																																																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.																					.	.	.	.													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.																					.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	F	V	D	C	S	K	I	K	L	L	E	A	A	I	T	.	.	.	P	E	T	K	L	V	W	I	E	T	P	T	N	P	T	Q	K	V	I	D	.	.	.	.	I	E	G	C	A	H	I	V	H	K	H	G	D	I	I	L	V	V	D	N	T	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S										.	.	.	T	T								S	S		T	T	T						.	.	.	.									T	T	S	S	S								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.																					.	.	.	.
Template SS confidence
																132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		T	G	F	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	.	.	G	G	M	P	V	G	A	F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P
Query Conservation																														.	.
Alig confidence											.	.	.																	.	.																													.	.																	.	.	.	.
Template Conservation											.	.	.																																															.	.																	.	.	.	.
Template Sequence		M	S	P	Y	F	Q	R	P	L	.	.	.	A	L	G	A	D	I	S	M	Y	S	A	T	K	Y	M	N	G	H	S	D	V	V	M	G	L	V	S	V	N	C	E	S	L	H	N	R	L	R	F	L	Q	N	S	L	G	A	.	.	V	P	S	P	I	D	C	Y	L	C	N	R	G	L	K	T	.	.	.	.
Template Known Secondary structure		T							T	T	.	.	.	T	T	T		S						T	T	T	T	T	T		S	S	S																											.	.															T	T	.	.	.	.
Template Predicted Secondary structure											.	.	.																																															.	.																	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.																			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	L	H	V	R	M	E	K	H	F	K	N	G	M	A	V	A	Q	F	L	E	S	N	P	W	V	E	K	V	I	Y	P	G	L	P	S	H	P	Q	H	E	L	V	K	R	Q	C	T	G	C	T	G	M	V	T	F	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	T	L	Q	H	A	E
Template Known Secondary structure		.	.																					T		T	T							T	T	S	T	T	S	T	T									S	S			S							.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure		.	.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.														.	320	.	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.																												.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	F	H	M	M	L	D	E	G	V	Y	L	A	P	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	A	G	F	M	S	V	A	H	S	M	E	D	I	N	N	T	I	D	A	A	R	R	V	F	A	K
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																																																								.	.
Template Sequence		I	F	L	K	N	L	K	L	F	T	L	A	E	S	L	G	G	F	E	S	L	A	E	L	P	A	I	M	T	H	A	S	V	L	K	N	D	R	D	V	L	G	I	S	D	T	L	I	R	L	S	V	G	L	.	.	E	D	E	E	D	L	L	E	D	L	D	Q	A	L	K	A
Template Known Secondary structure								S	S	S				S			S	S	S	S						G	G	G	T	T	T	T	T	S									T			T	T								S	.	.	S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions