Job Description P23893 Confidence 99.92% Date Thu Jan 5 11:40:26 GMT 2012 Rank 131 Aligned Residues 334 % Identity 15% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.												90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	Y	I	D	Y	V	G	S	W	G	P	M	V	L	G	H	N	H	P	A	I	R	N	A	V	I	E	A	A	E	R	G	L	S	F	G	A	P	T	.	.	.	.	.	.	.	.	.	.	.	E	M	E	V	K	M	A	Q	L	V	T	E	L	V	P	T	M	D	M	V	R	M	V	N	S	G	T	E	A
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		R	E	G	L	E	L	I	A	.	.	.	.	.	S	E	N	F	V	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	G	A	A	W	A	N	V	Q	P	H	S	G	S	Q	A
Template Known Secondary structure				S					T	.	.	.	.	.	T													T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		T	M	S	A	I	R	L	A	R	G	F	T	G	R	D	K	I	I	K	F	E	G	C	Y	.	.	H	G	H	A	D	C	L	L	V	K	A	G	S	G	A	L	T	L	G	Q	P	N	S	P	G	V	P	A	D	F	A	K	Y	T	L	T	C	T	Y	N	D	L	A	S	V	R	A	A	F	E	Q	Y	P	Q
Query Conservation																										.	.
Alig confidence											.	.														.	.																														.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation											.	.																																													.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		N	M	A	V	Y	M	A	L	M	.	.	E	P	G	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L	I	.	.	.	.	.	.	.	.	.	.	.	D	L	E	E	V	R	R	L	A	L	.	.	.	E
Template Known Secondary structure											.	.		T	T								G	G	G	T			G	G	G	T		T	T	S						S									T	T	T		S		.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Predicted Secondary structure											.	.																																													.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150												.	.	.	.	.	.	.	.	.	160				.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		E	I	A	C	I	I	V	E	P	V	A	G	N	M	N	C	V	P	P	L	P	E	F	L	P	G	L	R	A	L	C	D	E	F	G	A	L	L	I	I	D	E	V	M	T	G	F	.	R	V	A	L	A	G	A	Q	D	Y	Y	G	V	V	P	D	L	T	C	L	G	K	I	I	G	G	G	M	P	V	G	A
Query Conservation																																																	.
Alig confidence																				.	.	.	.	.																									.
Template Conservation																				.	.	.	.	.
Template Sequence		H	R	P	K	V	I	V	A	G	A	S	A	Y	P	R	F	W	D	.	.	.	.	.	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	L	P	Y	A	H	V	V	T	S	T	T	H	K	T	L	R	G	P	R	G	G	L	I
Template Known Secondary structure					S							S	S			S				.	.	.	.	.												T								T	T	T						T	T	S	S				T	T	T		S						S	S	G	G	G				S
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		F	G	G	R	R	D	V	M	D	A	L	A	P	T	G	P	V	Y	Q	A	G	T	L	S	G	N	P	I	A	M	A	A	G	F	A	C	L	N	E	V	A	Q	P	G	V	H	E	T	L	D	E	L	T	T	R	L	A	E	G	L	L	E	A	A	E	E	A	G	I	P	L	V	V	N	H	V	.	G	G	M
Query Conservation																																																																														.
Alig confidence																.	.	.																																																												.
Template Conservation																.	.	.
Template Sequence		L	S	N	D	P	E	L	G	K	R	I	D	K	L	.	.	.	I	F	P	G	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	V	E	N	A	K	R	L	A	E	E	L	A	R	R	G	Y	R	I	V	T	G	G	T	D	N	H	L
Template Known Secondary structure				S												.	.	.		T	T	T	T		S	S																	T	S																							T	T	T				G	G	G	S		S	S	S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.											.	.	.	.	.	.	400	.	.	.	.							.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		F	G	I	F	F	T	D	A	E	S	V	T	C	Y	Q	D	V	M	A	C	D	V	E	R	F	K	R	F	F	H	M	M	L	D	E	G	V	Y	L	.	.	.	.	.	.	.	.	.	.	A	P	S	A	F	E	A	G	F	M	S	.	.	.	.	.	.	V	A	H	S	M	E	D	I	N	N	T	I	D	A
Query Conservation																																									.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	V	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	K	G	L	T	G	K	E	A	E	E	R	L	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T												T	T	T									T	T			S		T	T	T		S												T	T			G	G	G
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.														.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		419	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	R	V	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	R	A	L	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions