Job Description Q47013 Confidence 4.13% Date Thu Jan 5 12:36:09 GMT 2012 Rank 97 Aligned Residues 52 % Identity 23% Template c1rm1C_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex Resolution 2.50 Å

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		R	T	H	L	E	D	A	L	N	E	N	I	K	S	D	P	S	W	P	N	E	V	Q	L	F	P	I	N	T	G	.	.	.	G	H	W	I	L	V	S	L	Q	K	I	V	N	K	K	N	N	K	L	Q	I	K	C	V	I
Query Conservation																																.	.	.
Alig confidence																																.	.	.															.	.	.
Template Conservation																																																	.	.	.
Template Sequence		K	N	I	W	Q	K	K	L	T	E	T	K	V	T	T	F	S	W	D	N	Q	F	N	D	Y	L	I	S	E	D	G	P	D	E	N	L	M	L	C	L	Y	D	K	V	T	R	T	.	.	.	K	A	R	W	K	C	S	L
Template Known Secondary structure													T	S	S			T	T	G	G	G	G				S					S	T	T	S														.	.	.	T	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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