 |
Job Description | P0A9F1 | Confidence | 80.28% | Date | Thu Jan 5 11:10:02 GMT 2012 |
Rank | 385 | Aligned Residues | 65 |
% Identity | 18% | Template | d2fnaa1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| Helicase DNA-binding domain
|
Resolution | 2.00 |
|
 |
  |   |
35 | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | E | L | I | D | D | Y | V | E | L | I | S | D | L | I | R | E | V | G | E | A | R | Q | V | D | M | A | A | R | L | G | . |
. |
. |
. |
. |
. |
V | S | Q | P | T | V | A | K | M | L | K | R | L | A | T | M | G | L | I | E | M | I | P | W | R | G | V | F | L | T | A | E | G | E | K | L | A |
Query Conservation |   |
  |   |   |   |
|
|
|
|   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |
|
|
|   |   |
|   | . | . | . | . | . | . |
|
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|   |
| . | . |   |
|
|
|   |
|
|   |
|
|
|   |   |   |
|   |   |
|   |
|   |   |
|
|   |   |
|   |
|
|   |
|   |
|
|
|
| . |
|   |   |   |   |
|   |
|   |
|
|
|
|   |   |
|
Template Sequence |   |
R | E | I | A | R | K | R | Y | L | N | I | X | R | T | L | S | K | C | . |
. |
G | K | W | S | D | V | K | R | A | L | E | L | E | E | G | I | E | I | S | D | S | E | I | Y | N | Y | L | T | Q | L | T | K | H | S | W | I | I | . |
K | E | G | E | K | Y | C | P | S | E | P | L | I | S | L | A |
Template Known Secondary structure |   |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . | . | B |
|  |  |  |  |  |  |  |  |  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  | . |  | S | S | S |
|  |  |  | S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  | . |  |  |
|
|  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
284 | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | |
|
. | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | |
. | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|