 |
Job Description | P0A9F1 | Confidence | 89.92% | Date | Thu Jan 5 11:10:02 GMT 2012 |
Rank | 306 | Aligned Residues | 55 |
% Identity | 18% | Template | d1fp1d1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| Plant O-methyltransferase, N-terminal domain
|
Resolution | 1.82 |
|
 |
  |   |
45 | . | . | . | . | 50 | . | |
|
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | S | D | L | I | R | E | . |
. |
. |
. |
V | G | E | A | R | Q | V | D | M | A | A | R | L | G | V | . |
. |
. |
. |
. |
. |
S | Q | P | T | V | A | K | M | L | K | R | L | A | T | M | G | L | I | E | M | I | P | W | R | . |
. |
. |
. |
. |
. |
. |
. |
G | V | F | L | T | A | E | G | E |
Query Conservation |   |
|   |   |
|   |   |   | . | . | . | . |   |
|   |   |   |   |   |
|
|
|   |   |
|   |
| . | . | . | . | . | . |
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |
|   |
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|   |   |
|
|
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |
|
|
|
|
|
|
Template Sequence |   |
L | F | E | I | I | A | K | A | T | P | P | G | A | F | M | S | P | S | E | I | A | S | K | L | P | A | S | T | Q | H | S | D | L | P | N | R | L | D | R | M | L | R | L | L | A | S | Y | S | V | L | T | S | T | T | R | T | I | E | D | G | G | A | E | R | V | Y | G | L | S | M | V | G | K |
Template Known Secondary structure |   |
 |  |  |  |  |  | T |
| S | S | T | T |
|
| B |
|  |  |  |  |  | T | T | S |
| G | G | G |
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |
| T | T | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|