Job Description P52043 Confidence 100.00% Date Wed Jan 25 15:20:57 GMT 2012 Rank 9 Aligned Residues 423 % Identity 18% Template c2hj0A_ PDB info PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																																																							.
Query SS confidence																		.	.																																																							.
Query Sequence		M	E	T	Q	W	T	R	M	T	A	N	E	A	A	E	I	.	.	I	Q	H	N	D	M	V	A	F	S	G	F	T	P	A	G	S	P	K	A	L	P	T	A	I	A	R	R	A	N	E	Q	H	E	A	K	K	P	Y	Q	I	R	L	L	T	G	A	S	I	S	A	A	A	D	.	D	V	L	S	D	A	D
Query Conservation																		.	.																																																							.
Alig confidence																		.	.																	.	.	.	.	.	.																																	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence		P	S	D	D	K	L	L	S	S	I	H	E	A	I	E	K	T	R	L	K	D	G	X	T	I	S	F	H	H	H	F	R	E	G	.	.	.	.	.	.	D	Y	V	X	N	X	V	L	D	E	I	A	K	X	G	I	K	D	I	S	I	A	P	S	S	I	A	N	V	H	E	P	L	I	D	H	I	K	N	G
Template Known Secondary structure		T	T						S									T	T			T	T								T	T	G	G	G	.	.	.	.	.	.	B													T	T			S						S				G	G	G	T	T							T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																																										.	.	.	.	.	.
Query SS confidence																										.	.																																										.	.	.	.	.	.
Query Sequence		A	V	S	W	R	A	P	Y	Q	T	S	S	G	L	R	K	K	I	N	Q	G	A	V	S	.	.	F	V	D	L	H	L	S	E	V	A	Q	M	V	N	Y	G	F	F	G	D	I	D	V	A	V	I	E	A	S	A	L	A	P	D	G	R	V	W	L	T	S	.	.	.	.	.	.	G	I	G	N	A	P	T
Query Conservation																										.	.																																										.	.	.	.	.	.
Alig confidence																										.	.																			.																							.	.	.	.	.	.
Template Conservation																																														.
Template Sequence		V	V	T	N	I	T	S	S	G	L	R	D	K	V	G	A	A	I	S	E	G	I	X	E	N	P	V	I	I	R	S	H	G	G	R	A	R	A	I	A	T	D	D	I	.	H	I	D	V	A	F	L	G	A	P	S	S	D	A	Y	G	N	A	N	G	T	R	G	K	T	T	C	G	S	L	G	Y	A	X	I
Template Known Secondary structure		S							S	B											T	T			S	S																	T	S	S	.			S							S				T	T	S				S	S	S	S	S	S			S
Template Predicted Secondary structure																																														.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.
Query Sequence		W	L	L	R	A	K	K	V	I	I	E	L	N	H	Y	H	D	P	R	V	A	E	L	A	D	I	V	I	P	G	A	P	P	R	R	N	S	V	S	I	F	H	A	M	D	R	V	G	T	R	Y	V	Q	I	D	P	K	K	I	V	A	V	V	E	T	N	L	P	.	.	.	.	.	.	D	A	G	N	M	L
Query Conservation																																																																						.	.	.	.	.	.
Alig confidence																				.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Template Conservation																				.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	K	Y	A	D	Q	V	V	I	V	T	D	T	L	V	P	Y	.	.	.	P	N	T	P	I	S	I	P	Q	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	Y	I	V	V	V	D	A	I	G	D	P	E	G	I	A	K	G	A	T	R
Template Known Secondary structure							S							S	S	B			S	.	.	.	S		S	S		S	B		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						S		S	B		T					S
Template Predicted Secondary structure																				.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.																											.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.
Query SS confidence																																																																							.	.	.	.
Query Sequence		D	K	Q	N	P	M	C	Q	Q	I	A	D	N	V	V	T	F	L	L	Q	E	M	A	H	G	R	I	P	P	E	F	L	P	L	Q	S	G	V	G	N	I	N	N	A	V	M	A	R	L	G	E	N	P	V	I	P	P	F	M	M	Y	S	E	V	L	Q	E	S	V	.	.	.	.	V	H	L	L	E	T	G
Query Conservation																																																																							.	.	.	.
Alig confidence																				.	.	.	.																																.	.															.	.	.	.
Template Conservation																				.	.	.	.																																.	.
Template Sequence		Y	T	K	N	P	K	E	L	L	I	A	E	Y	A	A	K	V	I	.	.	.	.	T	S	S	P	Y	Y	K	E	G	F	S	F	Q	T	G	T	G	G	A	S	L	A	V	T	R	F	X	R	E	Q	X	.	.	I	K	D	D	I	K	A	N	F	A	L	G	G	I	T	N	A	X	V	E	L	L	E	E	G
Template Known Secondary structure																				.	.	.	.		T	S	T	T		S	T	T							S	S															.	.			S									S												T	T
Template Predicted Secondary structure																				.	.	.	.																																.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		K	I	S	G	A	S	A	S	S	L	T	I	S	A	D	S	L	R	K	I	Y	D	N	M	D	Y	F	A	S	R	I	V	L	R	P	Q	E	I	S	N	N	P	E	.	.	.	.	I	I	R	R	L	G	V	I	A	L	N	V	G	L	E	F	D	I	Y	G	H	A	N	S	T	H	V	A	G	V	D	L	M
Query Conservation																																													.	.	.	.
Alig confidence										.	.	.	.																		.														.	.	.	.							.
Template Conservation										.	.	.	.																		.																								.
Template Sequence		L	V	D	K	I	L	D	V	.	.	.	.	Q	D	F	D	H	P	S	A	V	S	L	D	R	N	A	E	K	.	H	Y	E	I	D	A	N	X	Y	A	S	P	L	S	K	G	S	V	I	N	Q	L	D	.	I	C	V	L	S	A	L	E	V	D	T	N	F	N	V	N	V	X	T	G	S	D	G	V	I	R
Template Known Secondary structure		S							S	.	.	.	.			S	S										T	T	T	T	.												S	S	S	S			G	G	G	G		S	.							S				T	T						S	B		T	T			B
Template Predicted Secondary structure										.	.	.	.																		.																								.
Template SS confidence
		321	.	.	.	.	.	.	.					.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		N	G	I	G	G	S	G	D	F	E	R	N	A	Y	L	S	I	F	M	A	P	S	I	A	K	E	G	K	I	S	T	V	V	P	M	C	S	H	V	D	H	S	E	H	S	V	K	V	I	I	T	E	Q	G	I	A	.	D	L	R	G	L	S	P	L	Q	R	A	R	T	I	I	D	N	C	A	H	P	M	Y
Query Conservation																																																										.
Alig confidence																										.	.																															.																.	.
Template Conservation																										.	.																																															.	.
Template Sequence		G	A	S	G	G	H	C	D	T	A	F	A	A	K	X	S	L	V	I	S	P	L	V	R	.	.	G	R	I	P	T	F	V	D	K	V	N	T	V	I	T	P	G	T	S	V	D	V	V	V	T	E	V	G	I	A	I	N	P	N	R	P	D	L	I	E	Y	F	K	D	L	K	.	.	V	P	Q	L	T	I
Template Known Secondary structure			B		T	T								S	S								S			.	.	T	T			S	B		S	S		S	S		S	B		G	G	G							S	S						T	T								T	T	T		S	.	.	S
Template Predicted Secondary structure																										.	.																																															.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.			.	.	.	.	.	470
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	Y	L	H	R	Y	L	E	N	A	P	G	G	H	I	H	H	D	L	S	H
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		E	E	.	L	K	E	K	A	Y	A	I	V	G	N	P	Q	P	I	Q	Y	G	D
Template Known Secondary structure				.											S
Template Predicted Secondary structure				.
Template SS confidence
		471	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.