Job Description P00562 Confidence 98.65% Date Thu Jan 5 10:56:45 GMT 2012 Rank 89 Aligned Residues 152 % Identity 19% Template c3q2kB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca Resolution 2.13 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	I	G	L	V	L	F	G	K	G	N	I	G	S	R	W	L	E	L	F	A	R	E	Q	S	T	L	S	A	R	T	G	F	E	F	V	L	A	G	V	V	D	S	R	R	S	L	L	S	Y	D	G	L	D	A	S	R	A	L	A	F	F	N	D	E	A	V	E	Q	D	E	E	S	L	F	L	W	M	R
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.																							.	.	.	.
Template Sequence		R	K	I	R	F	G	L	V	G	C	G	R	I	S	K	N	H	I	G	A	I	A	.	.	.	.	.	.	.	.	Q	H	G	D	R	A	E	L	V	E	I	C	D	T	N	P	.	.	.	.	.	.	.	.	E	A	L	Q	A	A	E	A	A	T	G	A	R	P	F	S	S	L	S	D	M	L	.	.	.	.
Template Known Secondary structure												S	T	T									T	.	.	.	.	.	.	.	.	T		T	T	T									S	S		.	.	.	.	.	.	.	.													B			S	S						.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.																							.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30									.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	P	Y	D	D	L	V	V	L	D	V	T	A	S	Q	Q	L	A	D	Q	Y	L	D	F	A	S	H	G	F	H	V	I	S	A	N	K	L	A	G	A	S	D	S	N	K	Y	R	Q	I	H	D	A	F	E	K	T	G	R	H	W	L	Y	N	A	T	V	G	A	G	L	P	I	N	H	T	V	R	D	L
Query Conservation
Alig confidence		.																																		.	.																									.
Template Conservation		.																																		.	.																									.
Template Sequence		.	A	Q	G	N	A	D	A	L	V	L	A	T	P	S	G	L	H	P	W	Q	A	I	E	V	A	Q	A	G	R	H	V	V	S	.	.	E	K	P	M	A	T	R	W	E	D	G	K	R	M	V	K	A	C	D	E	A	G	V	R	.	L	F	V	V	K	Q	N	R	R	N	A	T	L	Q	L	V	K	K	A
Template Known Secondary structure		.						S						S		G	G	G											T	T						.	.		S	S	S		S	S															T			.						G	G	G	G
Template Predicted Secondary structure		.																																		.	.																									.
Template SS confidence
			69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		617	.	.	620	.			.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		I	D	S	G	D	.	.	T	I	L	S	I	S	G	I	F	S	G
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		I	E	Q	G	R	F	G	R	I	Y	M	V	T	V	N	V	F	W
Template Known Secondary structure				T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions