Job Description P00562 Confidence 100.00% Date Thu Jan 5 10:56:45 GMT 2012 Rank 10 Aligned Residues 310 % Identity 26% Template c3ingA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase (np_394635.1) from2 thermoplasma acidophilum at 1.95 a resolution Resolution 1.95 Å

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		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	I	G	L	V	L	F	G	K	G	N	I	G	S	R	W	L	E	L	F	A	R	E	Q	S	T	L	S	A	R	T	G	F	E	F	V	L	A	G	V	V	D	S	R	R	S	L	L	S	Y	D	G	L	D	A	S	R	A	L	A	F	F	N	D	E	A	V	E	Q	D	E	E	S	L	F	L	W	M	R
Query Conservation
Alig confidence																												.	.	.	.	.																					.
Template Conservation																												.	.	.	.	.																					.
Template Sequence		K	E	I	R	I	I	L	X	G	T	G	N	V	G	L	N	V	L	R	I	I	D	A	S	N	R	.	.	.	.	.	R	R	F	S	I	K	V	V	G	V	S	D	S	R	S	Y	A	S	G	R	.	N	L	D	I	S	S	I	I	S	N	K	E	K	T	G	R	I	S	D	R	A	F	S	G	P	E	D	L
Template Known Secondary structure												S																.	.	.	.	.													S	S	B					S	.	S														S		S		S	S	B			S	G	G	G	G
Template Predicted Secondary structure																												.	.	.	.	.																					.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.						.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.	550					.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		A	H	P	Y	D	D	L	V	V	L	D	V	T	A	.	.	.	.	S	Q	Q	L	A	D	Q	Y	L	D	F	A	S	H	G	F	H	V	I	S	A	N	K	L	A	G	A	S	D	S	N	K	Y	R	Q	I	H	D	A	F	E	K	T	G	R	H	W	L	Y	N	A	T	V	G	A	G	L	P	I	N	H	T
Query Conservation																.	.	.	.
Alig confidence		.														.	.	.	.																												.	.	.
Template Conservation		.																																													.	.	.
Template Sequence		.	X	G	E	A	A	D	L	L	V	D	C	T	P	A	S	R	D	G	V	R	E	Y	S	L	Y	R	X	A	F	E	S	G	X	N	V	V	T	A	N	K	S	G	L	A	.	.	.	N	K	W	H	D	I	X	D	S	A	N	Q	N	S	K	Y	I	R	Y	E	A	T	V	A	G	G	V	P	L	F	S	V
Template Known Secondary structure		.	T	T	S			S										S	S	S													T	T													.	.	.														T						G	G	G	S	S	T	T	S
Template Predicted Secondary structure		.																																													.	.	.
Template SS confidence
			78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.		.	.	.	.	.	690	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		V	R	D	L	I	D	S	G	D	T	I	L	S	I	S	G	I	F	S	G	T	L	S	W	L	F	L	Q	F	D	G	S	V	P	F	T	E	L	V	D	Q	A	W	Q	Q	G	L	T	E	P	D	P	R	D	D	L	S	G	K	D	V	M	R	K	L	V	I	L	A	R	E	A	.	G	Y	N	I	E	P	D
Query Conservation																																																																										.
Alig confidence							.																																																																			.
Template Conservation							.
Template Sequence		L	D	Y	S	I	.	L	P	S	K	V	K	R	F	R	G	I	V	S	S	T	I	N	Y	V	I	R	N	X	A	N	G	R	S	L	R	D	V	V	D	D	A	I	K	K	G	I	A	E	S	N	P	Q	D	D	L	N	G	L	D	A	A	R	K	S	V	I	L	V	N	H	I	F	G	T	E	Y	T	L	N
Template Known Secondary structure					T		.	T	T																							T	T														T		S		S	S	T					T	T																					G	G
Template Predicted Secondary structure							.
Template SS confidence
		154	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.				.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		Q	V	R	V	E	S	L	V	P	A	H	C	E	G	G	S	I	D	H	F	F	E	N	G	D	E	L	N	E	Q	M	V	Q	R	L	E	A	A	R	E	M	G	L	V	L	R	Y	V	A	R	F	D	A	N	G	.	.	.	K	A	R	V	G	V	E	A	V	R	E	D	H	P	L	A	S	L	L	P	C	D
Query Conservation																																																									.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	E	Y	S	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	R	S	Y	N	A	N	D	R	L	V	T	E	V	Y	V	D	D	R	R	P	V	A	V	S	R	I	I	S	L	N	K	D	D	F	L	X	S	I	G	X	D	G
Template Known Secondary structure		G	S	B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S				T	T											T	T													T	T		G	G	G	G	S		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.																														240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		769	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	F	A	I	E	S	R	W	Y	R	D	N	P	L	V	I	R	G	P	G	A	G	R	D	V	T	A	G	A	I	Q	S	D	I	N	R	L	A	Q
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		L	G	Y	Q	I	E	T	D	S	N	G	T	.	.	V	N	V	S	D	I	Y	D	G	P	Y	E	T	A	G	A	V	V	N	D	I	L	L	L	S	K
Template Known Secondary structure									S	S	S			.	.						S																				T
Template Predicted Secondary structure														.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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