Job Description P00562 Confidence 99.95% Date Thu Jan 5 10:56:45 GMT 2012 Rank 19 Aligned Residues 218 % Identity 26% Template c3ek5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium Resolution 2.56 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																	.	.	.	.	.	.	.															.
Query SS confidence																	.	.	.	.	.	.	.															.
Query Sequence		A	K	G	R	Q	L	H	K	F	G	G	S	S	L	A	.	.	.	.	.	.	.	D	V	K	C	Y	L	R	V	A	G	I	M	A	E	.	Y	S	Q	P	D	D	M	M	V	V	S	A	A	G	S	T	T	N	Q	L	I	N	W	L	K	L	S	Q	T	D	R	L	S	A	H	Q	V	Q	Q	T	L	R	R
Query Conservation																	.	.	.	.	.	.	.															.
Alig confidence																	.	.	.	.	.	.	.															.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Y	R	R	I	L	L	K	L	S	G	E	A	L	M	G	D	G	D	Y	G	I	D	P	K	V	I	N	R	L	A	H	E	V	I	E	A	Q	Q	A	G	A	Q	V	A	L	V	I	G	G	G	N	I	F	R	G	A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S		S								G	G	G	G	G	T	T	S	S	S	S																			T	T									S	T	T	T	S		S	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	C	D	L	I	S	G	L	L	P	A	E	E	A	D	S	L	I	S	A	F	V	S	D	L	E	R	L	A	A	L	L	D	S	G	I	N	D	A	V	Y	A	E	V	V	G	H	G	E	V	W	S	A	R	L	M	S	A	V	L	N	Q	Q	G	L	P	A	A	W	L	D	A	R	E	F	L	R	A	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	G	M	D	R	V	T	G	D	H	M	G	M	L	A	T	V	I	N	A	L	A	M	Q	D	A	L	E	K	L	G	A	K	V	R	V	M	S	A	I	K	I	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		T	T	S																											T	T								S	S			.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Template SS confidence
																																		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	Q	P	Q	V	D	E	G	L	S	Y	P	L	L	Q	Q	L	L	V	Q	H	P	G	K	R	L	V	V	T	G	F	I	S	R	N	N	A	G	E	T	V	L	L	G	R	N	G	S	D	Y	S	A	T	Q	I	G	A	L	A	G	V	S	R	V	T	I	W	S	D	V	A	G	V	Y	S	A	D	P
Query Conservation
Alig confidence		.	.	.	.																	.	.																.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																	.	.																.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	N	D	V	C	E	D	F	I	R	R	R	A	I	R	H	L	.	.	E	K	G	R	I	A	I	F	A	A	G	T	G	N	P	.	.	.	.	.	.	.	.	.	F	F	T	T	D	S	G	A	A	L	R	A	I	E	I	G	A	D	L	L	L	K	A	T	K	V	D	G	V	Y	D	K	D	P
Template Known Secondary structure		.	.	.	.	T	T	T	S													.	.		T	T							S	T	T	S	S	T	.	.	.	.	.	.	.	.	.	T															T		S							S	S	S	S		B	S	S		T
Template Predicted Secondary structure		.	.	.	.																	.	.																.	.	.	.	.	.	.	.	.
Template SS confidence
						108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.										.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	K	D	A	C	L	L	P	L	L	R	L	D	E	A	S	E	L	A	R	L	A	A	P	V	L	H	A	R	T	L	Q	P	V	S	G	S	E	I	D	L	Q	L	R	C	S	Y	T	P	.	.	.	.	.	.	.	.	.	D	Q	G	S	T	R	I	E	R	V
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.
Template Sequence		K	K	H	S	D	A	V	R	Y	D	S	L	T	Y	D	E	V	I	M	.	.	.	Q	G	L	E	V	M	D	T	A	A	F	A	L	A	R	D	S	D	L	P	L	R	I	F	G	M	S	E	P	G	V	L	L	R	I	L	H	G	A	Q	I	G	T	L	V	Q	G	R
Template Known Secondary structure		T	T		T	T			B		S										.	.	.	T	T			S	S											T	T										S	T	T							T	T				S
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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