Job Description P00562 Confidence 100.00% Date Thu Jan 5 10:56:45 GMT 2012 Rank 9 Aligned Residues 315 % Identity 25% Template c3c8mA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase from thermoplasma2 volcanium Resolution 1.90 Å

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		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	R	I	G	L	V	L	F	G	K	G	N	I	G	S	R	W	L	E	L	F	A	R	E	Q	S	T	L	S	A	R	T	G	F	E	F	V	L	A	G	V	V	D	S	R	R	S	L	L	S	Y	D	G	L	D	A	S	R	A	L	A	F	F	N	D	E	A	V	E	Q	D	E	E	S	L	F	L	W	M
Query Conservation
Alig confidence																													.	.																							.
Template Conservation																													.	.																							.
Template Sequence		X	K	T	I	N	L	S	I	F	G	L	G	N	V	G	L	N	L	L	R	I	I	R	S	F	N	E	.	.	E	N	R	L	G	L	K	F	N	V	V	F	V	A	D	S	L	H	S	Y	Y	N	.	E	R	I	D	I	G	K	V	I	S	Y	K	E	K	G	S	L	D	S	L	E	Y	E	S	I	S	A	S
Template Known Secondary structure													S																.	.			S	S	S											S	S						.	T	T												T	T		G	G	G			S
Template Predicted Secondary structure																													.	.																							.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550					.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		R	A	H	P	Y	D	D	L	V	V	L	D	V	T	A	.	.	.	.	S	Q	Q	L	A	D	Q	Y	L	D	F	A	S	H	G	F	H	V	I	S	A	N	K	L	A	G	A	S	D	S	N	K	Y	R	Q	I	H	D	A	F	E	K	T	G	R	H	W	L	Y	N	A	T	V	G	A	G	L	P	I	N	H
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																												.	.	.
Template Conservation																																																.	.	.
Template Sequence		E	A	L	A	R	D	F	D	I	V	V	D	A	T	P	A	S	A	D	G	K	K	E	L	A	F	Y	K	E	T	F	E	N	G	K	D	V	V	T	A	N	K	S	G	L	A	.	.	.	N	F	W	P	E	I	X	E	Y	A	R	S	N	N	R	R	I	R	Y	E	A	T	V	A	G	G	V	P	L	F	S
Template Known Secondary structure						S	S		S						S				S	S	S													T	T													.	.	.														T						G	G	G	S	S	T	T	S
Template Predicted Secondary structure																																																.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.		.	.	.	.	.	690
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		T	V	R	D	L	I	D	S	G	D	T	I	L	S	I	S	G	I	F	S	G	T	L	S	W	L	F	L	Q	F	D	G	S	V	P	F	T	E	L	V	D	Q	A	W	Q	Q	G	L	T	E	P	D	P	R	D	D	L	S	G	K	D	V	M	R	K	L	V	I	L	A	R	E	A	.	G	Y	N	I	E	P
Query Conservation																																																																											.
Alig confidence								.																																																																			.
Template Conservation								.
Template Sequence		F	I	D	Y	S	V	.	L	P	S	R	I	K	K	F	R	G	I	V	S	L	T	I	N	Y	F	I	R	E	L	A	N	K	R	E	F	D	D	V	L	S	E	A	T	K	L	G	I	V	E	K	N	Y	K	D	D	L	T	G	L	D	A	A	R	K	S	V	I	L	C	N	H	L	Y	G	S	S	Y	R	L
Template Known Secondary structure							S	.	T	T																							T	T														T	S	S		S	S						T	T																					G
Template Predicted Secondary structure								.
Template SS confidence
		155	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		691	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.				.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		D	Q	V	R	V	E	S	L	V	P	A	H	C	E	G	G	S	I	D	H	F	F	E	N	G	D	E	L	N	E	Q	M	V	Q	R	L	E	A	A	R	E	M	G	L	V	L	R	Y	V	A	R	F	.	.	.	D	A	N	G	K	A	R	V	G	V	E	A	V	R	E	D	H	P	L	A	S	L	L	P	C
Query Conservation																																																						.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	V	F	Y	E	G	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	R	S	F	G	K	N	E	R	L	V	T	E	T	G	I	V	N	G	K	P	S	A	E	S	R	I	K	S	L	D	S	N	D	Y	L	L	T	L	G	K	G
Template Known Secondary structure		G	G	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T											T	T													T	T		G	G	G	G	S		T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.																													.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	F	A	I	E	S	R	W	Y	R	D	N	P	L	V	I	R	G	P	G	A	G	R	D	V	T	A	G	A	I	Q	S	D	I	N	R	L	A
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		S	L	G	Y	Q	L	Q	T	D	T	N	G	T	.	.	L	N	V	S	D	L	Y	D	G	P	Y	E	T	A	G	A	V	X	N	D	L	V	I	L	S
Template Known Secondary structure										S	S	S			.	.						S	S
Template Predicted Secondary structure															.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions