 |
Job Description | P00562 | Confidence | 94.86% | Date | Thu Jan 5 10:56:45 GMT 2012 |
Rank | 210 | Aligned Residues | 88 |
% Identity | 18% | Template | c2yv3B_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; |
PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase from thermus2 thermophilus hb8
|
Resolution | 2.70 Å |
|
 |
  |   |
459 | 460 | . | . | . | . | . | . | |
. | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | G | L | V | L | F | G | K | . |
G | N | I | G | S | R | W | L | E | L | F | A | R | E | Q | S | T | L | S | A | R | T | G | F | E | F | V | L | A | G | V | V | D | S | R | R | S | L | L | S | Y | D | G | L | D | A | S | R | A | L | A | F | F | N | D | E | A | V | E | Q | D | E | E | S | L | F | L | W | M | R | A |
Query Conservation |   |
|   |
|   |
|   |
|   | . |
|   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|
|
|
|
|   |   |
|   |
|
|
|
|
|
|   |   |   |   |   | . | . | . | . | . |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |
Template Sequence |   |
M | R | V | A | V | V | G | A | T | G | A | V | G | R | E | I | L | K | V | L | E | A | R | N | F | . |
. |
. |
. |
. |
P | L | S | E | L | R | L | Y | A | S | P | R | S | A | G | V | R | L | A | F | R | G | E | E | I | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | E | P | L | P | E |
Template Known Secondary structure |   |
|  |  |  |  |  | T | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . | . | . | . | . |
|
|
|  |  |  |  |  |  |
| G | G | G | S | S |
|  |  |  |  | T | T |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
| S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . |
  |
  |   |
538 | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | P | Y | D | D | L | V | V | L | D | V | T | A | S | Q | Q | L | A | D | Q | Y | L | D | F | A | S | H | G | F | H | V | I |
Query Conservation |   |
  |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
Template Sequence |   |
G | P | L | P | V | D | L | V | L | A | S | A | G | G | G | I | S | R | A | K | A | L | V | W | A | E | G | G | A | L | V | V |
Template Known Secondary structure |   |
S |
|
| S |
| S |  |  |  |  |
| S |
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|