Job Description P00562 Confidence 99.92% Date Thu Jan 5 10:56:45 GMT 2012 Rank 36 Aligned Residues 208 % Identity 19% Template c2va1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum Resolution 2.50 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence		K	G	R	Q	L	H	K	F	G	G	S	S	L	A	.	.	.	.	.	.	.	D	V	K	C	Y	L	R	V	A	G	I	M	A	E	Y	S	Q	P	D	D	M	M	V	V	S	A	A	G	S	T	T	N	Q	L	I	N	W	L	K	L	S	Q	T	D	R	L	S	A	H	Q	V	Q	Q	T	L	R	R	Y	Q
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	R	I	V	I	K	I	S	G	A	C	L	K	Q	N	D	S	S	I	I	D	F	I	K	I	N	D	L	A	E	Q	I	E	K	I	S	K	K	Y	I	V	S	I	V	L	G	G	G	N	I	W	R	G	S	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S								G	G	G	G		S	S	T	T		S	S																T	T	T	S									T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	L	I	S	G	L	L	P	A	E	E	A	D	S	L	I	S	A	F	V	S	D	L	E	R	L	A	A	L	L	D	S	G	I	N	D	A	V	Y	A	E	V	V	G	H	G	E	V	W	S	A	R	L	M	S	A	V	L	N	Q	Q	G	L	P	A	A	W	L	D	A	R	E	F	L	R	A	E	R	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	L	D	M	D	R	N	L	A	D	N	M	G	M	M	A	T	I	I	N	G	L	A	L	E	N	A	L	N	H	L	N	V	N	T	I	V	L	S	A	I	K	C	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T																											T	T	T								S	S			.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template SS confidence
																																60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		A	Q	P	Q	V	D	E	G	L	S	Y	P	L	L	Q	Q	L	L	V	Q	H	P	G	K	R	L	V	V	T	G	F	I	S	R	N	N	A	G	E	T	V	L	L	G	R	N	G	S	D	Y	S	A	T	Q	I	G	A	L	A	G	V	S	R	V	T	I	W	S	D	.	V	A	G	V	Y	S	A	D	P	R
Query Conservation																																																																							.
Alig confidence		.	.																	.	.												.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.																	.	.												.	.	.	.	.	.	.	.	.
Template Sequence		.	.	D	K	L	V	H	E	S	S	A	N	N	I	K	K	A	I	.	.	E	K	E	Q	V	M	I	F	V	A	G	.	.	.	.	.	.	.	.	.	T	G	F	P	Y	F	T	T	D	S	C	A	A	I	R	A	A	E	T	E	S	S	I	I	L	M	G	K	N	G	V	D	G	V	Y	D	S	D	F	Y
Template Known Secondary structure		.	.	T	T	T														.	.		T	T							S	T	.	.	.	.	.	.	.	.	.	T	S	S	S	S															T		S							S	S			S	B		S				B
Template Predicted Secondary structure		.	.																	.	.												.	.	.	.	.	.	.	.	.
Template SS confidence
				104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130										.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.
Query Sequence		K	V	K	D	A	C	L	L	P	L	L	R	L	D	E	A	S	E	L	A	R	L	A	A	P	V	L	H	A	R	T	L	Q	P	V	S	G	S	E	I	D	L	Q	L	R	C	S	Y	T	P	.	.	.	.	.	.	.	.	.	D	Q	G	S	T	R	I	E	R
Query Conservation																																																				.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.												.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.												.	.	.
Template Sequence		.	.	.	.	.	.	.	.	E	H	I	T	F	N	M	A	L	T	Q	.	.	.	N	L	K	V	M	D	A	T	A	L	A	L	C	Q	E	N	N	I	N	L	L	V	F	N	I	D	K	P	N	A	I	V	D	V	L	E	K	K	N	K	Y	T	I	V	S	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	S											.	.	.	T			S	S											T	T								S	S	S	T	T							T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
										179	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions