Job Description P00562 Confidence 91.83% Date Thu Jan 5 10:56:45 GMT 2012 Rank 245 Aligned Residues 127 % Identity 17% Template c2f1kD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of synechocystis arogenate dehydrogenase Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.												.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	L	V	L	F	G	K	G	N	I	G	S	R	W	L	E	L	F	A	R	E	Q	S	T	L	S	A	R	T	G	F	E	F	V	L	A	G	V	V	D	S	R	R	S	L	.	.	.	.	.	.	.	.	.	.	.	L	S	Y	D	G	L	D	A	S	R	A	L	A	F	F	N	D	E	A	V	E	Q	D
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.								.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.								.	.	.
Template Sequence		M	K	I	G	V	V	G	L	G	L	I	G	A	S	L	A	G	D	L	R	R	R	.	.	.	.	.	.	.	.	G	H	Y	L	I	G	V	.	.	.	S	R	Q	Q	S	T	C	E	K	A	V	E	R	Q	L	V	D	E	A	G	Q	D	L	S	L	L	Q	T	A	K	I	I	F	L	C	T	P	I	Q	L
Template Known Secondary structure										S													T	.	.	.	.	.	.	.	.	T							.	.	.		S											T	T	S		S				S		G	G	G	G	T	T		S						S		G	G	G
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.									.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.																								.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	S	L	F	L	W	M	R	A	H	P	Y	D	D	L	V	V	L	D	V	T	A	.	S	Q	Q	L	A	D	Q	Y	L	D	F	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	F	H	V	I	S	A	N	K	L	A	G	A	S	D	S	N	K	Y
Query Conservation																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		I	L	P	T	L	E	K	L	I	P	H	L	S	P	T	A	I	V	T	D	V	A	S	V	K	T	A	I	A	E	P	A	S	Q	L	W	S	G	F	I	G	G	H	P	A	G	T	A	A	Q	G	I	D	G	A	E	E	N	L	F	V	N	A	P	Y	V	L	T	P	T	.	.	.	E	Y	T	D	P	E	Q
Template Known Secondary structure										G	G	G	S		T	T								S			T	T	T									T	T										S			S	G	G	G			S	S	T	T	T	T									.	.	.	T	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	I	H	D	A	F	E	K	T	G	R	H	W	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	L	R	S	V	L	E	P	L	G	V	K	I	Y	L
Template Known Secondary structure									G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions