Job Description P00562 Confidence 94.76% Date Thu Jan 5 10:56:45 GMT 2012 Rank 212 Aligned Residues 137 % Identity 10% Template c1u8sB_ PDB info PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor Resolution 2.45 Å

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		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.					.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		S	H	D	D	V	C	L	I	E	F	Q	V	P	A	S	Q	D	F	K	L	A	H	K	E	I	D	Q	I	L	K	R	A	Q	V	R	P	L	A	V	G	V	H	N	D	R	Q	L	L	Q	F	.	.	.	.	C	Y	T	S	E	V	A	D	S	A	L	K	I	L	D	E	A	G	L	P	G	E	L	R	L	R
Query Conservation																																																				.	.	.	.
Alig confidence																.	.	.																																		.	.	.	.
Template Conservation																.	.	.
Template Sequence		S	L	T	Q	H	L	V	I	T	A	V	G	T	D	.	.	.	R	P	G	I	C	N	E	V	V	R	L	V	T	Q	A	G	C	N	I	I	D	S	R	I	A	M	F	G	K	E	F	T	L	L	M	L	I	S	G	S	P	S	N	I	T	R	V	E	T	T	L	P	L	L	G	Q	Q	H	D	L	I	T	M
Template Known Secondary structure																.	.	.		T	T											T	T	T												T	T																												T	T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
														389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.						.	.	.	.	.	.	.	430	.	.	.	.	.	.							.	.	.	440	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.															.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.															.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Q	G	L	A	L	V	A	M	V	G	A	G	V	T	R	N	P	L	H	C	H	R	F	W	Q	Q	L	K	G	Q	P	V	E	F	.	.	.	.	.	T	W	Q	S	D	D	G	I	S	L	V	A	V	L	.	.	.	.	.	.	R	T	G	P	T	E	S	L	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																						.	.	.	.	.															.	.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		M	K	R	T	S	P	H	D	H	Q	T	H	A	Y	T	V	E	V	Y	V	E	S	.	.	.	D	D	K	L	G	L	T	E	K	F	T	Q	F	F	A	Q	R	Q	I	G	M	A	S	L	S	A	Q	T	I	S	K	N	Q	F	H	I	A	I	S	A	R	V	D	S	G	C	N	L	M	Q	L	Q	E	E	F
Template Known Secondary structure														S										.	.	.	S			T	T	T											T	T																										T	T	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		446	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	L	H	Q	S	V	F	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	L	C	T	A	L	D	V	Q
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions