 |
Job Description | P00562 | Confidence | 73.93% | Date | Thu Jan 5 10:56:45 GMT 2012 |
Rank | 372 | Aligned Residues | 78 |
% Identity | 13% | Template | c1pjcA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:protein (l-alanine dehydrogenase); |
PDBTitle: l-alanine dehydrogenase complexed with nad
|
Resolution | 2.00 Å |
|
 |
  |   |
402 | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | |
|
|
. | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 460 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
Query Sequence |   |
T | R | N | P | L | H | C | H | R | F | W | Q | Q | L | K | G | Q | P | V | E | F | T | W | . |
. |
. |
Q | S | D | D | G | I | S | L | V | A | V | L | R | T | G | P | T | E | S | L | I | Q | G | L | H | Q | S | V | F | R | A | E | K | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | G | L | V | L |
Query Conservation |   |
  |   |   |   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|   | . | . | . |   |
|   |
|
|   |   |
|
|   |
|
|   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
Template Sequence |   |
Y | L | H | L | A | A | A | R | E | L | T | E | Q | L | M | R | V | G | L | T | A | I | A | Y | E | T | V | E | L | P | N | R | S | L | P | L | L | T | P | M | S | I | I | A | G | R | L | S | V | Q | F | G | A | R | F | L | E | R | Q | Q | G | G | R | G | V | L | L | G | G | V | P | G | V | K | P | G | K | V | V | I |
Template Known Secondary structure |   |
|
|
| G | G | G |
|  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  | G | G | G |
|
|
| T | T | S |
|
| T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | G | G | G | T | S |
|
|
|
| T | T |
| B | T | T | B |
|
|
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
  |
  |   |
464 | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | G | K | G | N | I | G | S | R | W | L | E | L | F | A | R |
Query Conservation |   |
  |
|   |
|   |
|
|   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |   |
Template Sequence |   |
L | G | G | G | V | V | G | T | E | A | A | K | M | A | V | G |
Template Known Secondary structure |   |
 |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|