 |
Job Description | P0AG03 | Confidence | 24.63% | Date | Thu Jan 5 11:27:43 GMT 2012 |
Rank | 260 | Aligned Residues | 130 |
% Identity | 14% | Template | c3oa2B_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:wbpb; |
PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from pseudomonas2 aeruginosa in complex with nad at 1.5 angstrom resolution
|
Resolution | 1.50 Å |
|
 |
  |   |
1 | . | . | . | |
. | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  | . |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |
|
Query SS confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | R | L | . |
I | V | G | I | S | G | A | S | G | A | I | Y | G | V | R | L | L | Q | V | L | R | D | V | T | D | I | E | T | H | L | V | M | S | Q | A | A | R | Q | T | L | S | L | E | T | D | F | S | L | R | E | V | Q | A | L | A | D | V | T | H | D | A | R | D | I | A | A | S | I | S | S | G | S | F | Q | T |
Query Conservation |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |
|
|   |
|
|   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|   |   |   |
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|
|
|   |
|
|   |   |   | . | . | . | . |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
| . | . | . | . |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
Template Sequence |   |
M | K | N | F | A | L | I | G | A | A | G | Y | I | A | . |
. |
. |
. |
P | R | H | M | R | A | I | K | D | T | G | N | C | L | V | S | A | Y | D | I | N | D | S | V | G | I | I | D | . |
. |
. |
. |
S | I | S | P | Q | S | E | F | F | T | E | F | E | F | F | L | D | H | A | S | N | L | K | R | D | S | A | T | A | L |
Template Known Secondary structure |   |
|
|  |  |  |  |  | S | T | T | S | S | S |  | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |
| S | S |
|
|
| G | G | G | G | . | . | . | . | G | T |
| T | T |
|  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T | T | S |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | |
|
|
|
. | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | |
|
|
|
. | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | |
|
. | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | |
. | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |
|
|
|
|  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | G | M | V | I | L | P | C | S | I | K | T | L | S | G | I | V | H | S | Y | T | D | G | L | L | T | R | A | A | D | V | V | L | K | E | R | R | P | L | V | L | C | V | R | E | T | P | . |
. |
L | H | L | G | H | L | R | L | M | T | Q | A | A | E | . |
I | G | A | V | I | M | P | P | V | P | A | F | Y | H |
Query Conservation |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|
|   |
|
|
|
|
|
|
|
|
|   |
| . | . |   |   |   |   |   |
|   |
|
|   |   |
|   |   | . |   |
|   |   |
|   |
|   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|
|
|   |   | . | . | . |
|
|
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
Template Sequence |   |
D | Y | V | S | I | C | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | P | N | Y | L | H | Y | P | H | I | A | A | G | L | R | L | G | C | D | V | I | C | . |
. |
. |
E | K | P | L | V | P | T | P | E | M | L | D | Q | L | A | V | I | E | R | E | T | D | K | R | L | Y | N | I | L | Q | L | R | H | H |
Template Known Secondary structure |   |
|  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  | . | . | . |
| S | S |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
|
| G | G | G | G |
|
Template Predicted Secondary structure |   |
|  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
73 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
|
|
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|