Job Description P32677 Confidence 57.96% Date Thu Jan 5 11:50:05 GMT 2012 Rank 462 Aligned Residues 84 % Identity 6% Template c3k7aM_ PDB info PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex Resolution 3.80 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Q	T	L	N	E	M	Q	M	Q	P	Q	E	Q	Q	T	A	R	L	I	V	A	S	L	L	S	H	C	R	D	L	L	G	S	Q	I	Q	T	A	S	R	S	Q	A	L	F	E	A	I	R	D	Y	I	D	E	R	Y	A	S	A	L	T	R	E	S	V	A	Q	A	F	Y	I	S	P	N	Y	L	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	A	A	F	A	K	I	T	M	L	C	D	A	A	E	L	P	K	I	V	K	D	C	A	K	E	A	Y	K	L	C	H	D	E	K	T	L	K	G	K	S	M	E	S	I	M	A	A	S	I	L	I	G	C	R	R	A	E	V	A	R	T	F	K	E	I	Q	S	L	I	H	V	K	T	K	E	F	G	K
Template Known Secondary structure																T	T							T										S	S	S		S	S					S					T	T	T	T	T	T	T	S	B	T	T	B	S	S									S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		205	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	N	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions