Job Description P32677 Confidence 56.51% Date Thu Jan 5 11:50:05 GMT 2012 Rank 473 Aligned Residues 153 % Identity 5% Template c2oz6A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:virulence factor regulator; PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp Resolution 2.80 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		F	V	D	T	G	A	G	A	T	L	V	P	G	D	.	.	.	.	.	V	L	Y	V	P	A	G	G	W	N	F	P	Q	W	Q	A	P	A	T	T	F	S	V	L	F	G	K	Q	Q	L	G	F	S	V	V	Q	W	D	G	K	Q	Y	Q	N	L	A	K	Q	H	V	A	R	R	G	P	R	I	G	S	F	L
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.
Template Conservation
Template Sequence		R	R	Y	T	A	K	S	T	I	I	Y	A	G	D	R	C	E	T	L	F	F	I	I	K	G	S	V	T	I	L	I	E	D	D	D	G	R	E	M	I	I	G	Y	L	N	S	G	D	F	F	G	E	L	G	L	F	E	Q	E	R	S	A	W	V	R	A	K	V	E	C	E	V	A	E	I	S	Y	A	K	F
Template Known Secondary structure						T	T						T	T	S	B										S									T	T	S										T	T				S		T	T	T				B			S					S	S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.										.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	T	L	N	E	M	Q	M	Q	P	Q	E	Q	Q	T	A	R	L	I	V	A	S	L	L	S	H	C	R	D	L	L	G	S	Q	I	Q	T	A	S	R	S	Q	A	L	F	E	A	I	R	D	Y	I	D	E	R	Y	.	.	.	.	.	.	.	.	.	A	S	A	L	T	R	E	S	V	A	Q	A	F	Y
Query Conservation																																																											.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		R	E	L	S	Q	Q	D	S	E	I	L	Y	T	L	G	S	Q	M	A	D	R	L	R	K	T	T	R	K	V	G	D	L	.	.	.	.	.	A	F	L	D	V	T	G	R	V	A	R	T	L	L	D	L	C	Q	Q	P	D	A	M	T	H	P	D	G	M	Q	I	K	I	T	R	Q	E	I	G	R	I	V	G
Template Known Secondary structure																																		.	.	.	.	.																	T	T	S	T	T					T	T																T
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		197	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	P	N	Y	L	S	H	L	F	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	S	R	E	M	V	G	R	V	L	K	S
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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