Job Description P65367 Confidence 99.44% Date Thu Jan 5 12:10:13 GMT 2012 Rank 42 Aligned Residues 145 % Identity 10% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	I	G	I	F	V	G	T	M	Y	G	N	S	L	L	V	A	E	E	A	E	A	I	L	T	A	Q	G	H	K	A	T	V	F	E	D	P	E	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	L	P	Y	Q	D	K	Y	V	L	V	V	T	S	T	T	G	Q
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation											.																																																																					.
Template Sequence		P	N	I	L	V	L	F	Y	G	.	Y	G	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	M	R	W	A	D	G	F	A	I	G	S	P	T	R	.	Y
Template Known Secondary structure											.	S	S																	T												S		G	G	G		T	T			G	G	G	S	T	T	S		B										S									B	.	T
Template Predicted Secondary structure											.																																																																					.
Template SS confidence
		5	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																	120	.	.	.
Predicted Secondary structure																.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	L	P	D	S	I	V	P	L	F	Q	G	I	.	.	K	D	S	L	G	F	Q	P	N	L	R	Y	G	V	I	A	L	G	D	S	S	Y	V	N	F	C	N	G	G	K	Q	F	D	A	L	L	Q	E	Q	S	A	Q	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	M	L
Query Conservation																.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	M	A	G	G	L	K	T	F	L	D	T	T	A	I	L	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A	S	T	V	H	G	G	H	E	T	T	I	L	T	M	S	T	Y	A	Y	H	F	G	M	I	I	V	P	I	G	Y	G	I	P	E	L	F	Q	T	T	T	G	G	G	P	Y	G
Template Known Secondary structure		T	B											T	T					T	T	T	T	T	T	T									B	S	S	T	T	S	S	S	S							T							T							T	T		S	T						S	S	S		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	D	A	S	E	N	P	E	P	E	T	E	S	N	P	W	V	E	Q	W	G	T	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	H	L	G	S	K	E	E	L	D	E	M	E	R	K	I	A	R	F	Q	G	K	R	I
Template Known Secondary structure					B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions