Job Description P76472 Confidence 100.00% Date Wed Jan 25 15:21:08 GMT 2012 Rank 6 Aligned Residues 222 % Identity 20% Template c3qbuD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori Resolution 2.57 Å

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		4	.	.	.	.	.	10	.													.	.	.									.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.
Query Sequence		V	G	L	R	I	D	V	D	.	.	.	.	.	.	.	.	.	.	.	.	T	F	R	.	.	.	.	.	.	.	.	G	T	R	E	G	V	P	R	L	L	E	I	L	S	K	H	N	I	Q	A	S	I	F	F	S	V	G	P	D	N	M	G	R	H	L	W	R	L	V	K	P	Q	F	L	W	K	M	L	R
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	Y	G	V	D	I	D	A	V	A	G	W	L	G	S	Y	G	G	E	D	S	P	D	D	I	S	R	G	L	F	A	G	E	V	G	I	P	R	L	L	K	L	F	K	K	Y	H	L	P	A	T	W	F	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	S	S		T	T														T												T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	A	A	S	L	Y	G	W	D	I	L	L	A	G	T	A	W	P	G	K	E	I	G	H	A	N	A	D	I	I	R	E	A	A	K	H	H	E	V	G	L	H	A	W	D	H	H	A	W	Q	A	R	S	G	N	W	D	R	Q	T	M	I	D	D	I	A	R	G	L	R	T	L	E	E	I	I	G	Q	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	S	I	E	T	F	P	E	Q	M	K	M	I	V	D	A	G	H	E	V	G	A	H	G	Y	S	H	.	.	.	.	E	N	P	I	A	M	S	T	K	Q	E	E	D	V	L	L	K	S	V	E	L	I	K	D	L	T	G	K	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T	T					B			S	S		.	.	.	.			G	G	G	S																					S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template SS confidence
																					63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	C	S	A	A	A	G	W	R	A	D	Q	K	V	I	E	A	K	E	A	F	H	L	R	Y	N	S	D	C	R	G	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	R	P	L	L	E	S	G	N	P	G	T	A	Q	I	P	V	T	L	P	T	W
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	G	Y	V	A	P	W	W	E	F	S	N	I	T	N	E	L	L	L	K	H	G	F	K	Y	D	H	S	L	M	H	N	D	F	T	P	Y	Y	V	R	V	G	D	S	W	S	K	I	D	Y	S	L	E	A	K	D	W	M	K	P	L	I	R	G	V	E	T	N	L	V	E	I	P	A	N	W	Y	L	D
Template Known Secondary structure								G	G	G			S	S								T	T	T									S		S	S	S									B						T	T	S		G	G	G	T					B														G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		201	.															.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.											.																		.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.											.																		.
Query Sequence		D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	G	R	D	V	K	A	E	D	F	N	G	W	L	L	N	R	I	L	R	D	K	G	T	P	.	V	Y	T	I	H	A	E	V	E	G	.	C	A	Y	Q	H	N	F	V	D	L	L	K	R	A	A	Q	E	.	G	V	T	F	C	P	L	S
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.											.																		.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.											.																		.
Template Conservation
Template Sequence		D	L	P	P	M	M	F	I	K	K	S	P	N	S	F	G	F	V	S	P	R	D	I	G	Q	M	W	I	D	Q	F	D	W	V	Y	R	E	M	D	Y	A	V	F	S	M	T	I	H	P	D	V	S	A	R	P	Q	V	L	L	M	H	E	K	I	I	E	H	I	N	K	H	E	G	V	R	W	V	T	F	N
Template Known Secondary structure		S								T	T		T	T					S																					S														T	S															T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	S	E	T	L	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	A	D	D	F	L	K	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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