Job Description P76472 Confidence 98.20% Date Wed Jan 25 15:21:08 GMT 2012 Rank 25 Aligned Residues 184 % Identity 23% Template c3n92A_ PDB info PDB header:transferase Chain: A: PDB Molecule:alpha-amylase, gh57 family; PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose Resolution 2.89 Å

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		91	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																					.																																								.	.	.	.	.	.	.	.	.
Query SS confidence												.																					.																																								.	.	.	.	.	.	.	.	.
Query Sequence		A	D	I	I	R	E	A	A	K	H	.	H	E	V	G	L	H	A	W	D	H	H	A	W	Q	A	R	S	G	N	W	.	D	R	Q	T	M	I	D	D	I	A	R	G	L	R	T	L	E	E	I	I	G	Q	P	V	T	C	S	A	A	A	G	W	R	A	D	Q	K	V	I	.	.	.	.	.	.	.	.	.
Query Conservation												.																					.																																								.	.	.	.	.	.	.	.	.
Alig confidence												.											.	.	.	.							.																																								.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		G	K	L	R	E	L	Q	D	Q	G	Y	V	E	V	I	T	S	A	A	T	H	.	.	.	.	G	Y	L	P	L	L	G	R	D	E	A	I	R	A	Q	I	A	N	G	V	A	T	Y	E	K	H	F	G	M	K	P	K	G	I	W	L	P	E	C	A	Y	R	P	A	G	E	W	E	L	P	G	G	R	K	V
Template Known Secondary structure										T	T	S					B			T	T		.	.	.	.	B		G	G	G		S																					S	S				B	B			G	G	G		B			S						T	T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
								160	.	.	.	.	.	.	.	.	.	170																					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure		.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query SS confidence		.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query Sequence		.	.	.	.	.	.	E	A	K	E	A	F	H	L	R	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	C	R	G	A	M	P	F	R	P	L	L	E	S	G	N	P	G	T	A	Q	I	P	V	T	L	P	T	W	D	E	V	I	G	R	D	V	K	A	E	.	.
Query Conservation		.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Alig confidence		.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																											.	.
Template Conservation																																																					.
Template Sequence		K	R	Q	G	I	E	K	F	L	E	E	F	G	L	R	Y	F	F	V	E	S	R	L	I	D	E	G	P	A	S	N	V	Y	G	E	V	L	I	A	D	T	E	K	T	T	L	R	P	Y	W	I	.	K	G	S	N	V	A	V	F	A	R	N	R	E	T	G	H	Q	V	W	S	A	H	Y	G	Y	P	G	D
Template Known Secondary structure												T	T	T								S										S	S	S	S								S	S		S	S	S					.	S	S	S	S																	T	T	T	S	G	G	G
Template Predicted Secondary structure																																																					.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
																																																					212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	N	G	W	L	L	N	R	I	L	R	D	K	G	T	P	V	Y	T	I	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	W	Y	R	E	F	H	K	K	A	P	K	S	G	G	Q	Y	W	R	I	T	S	K	E	V	G	L	G	E	K	E	F	Y	D	P	D	K	A	M	E	R	V	E	E	H	A	R	H	F	V	S	L	V	E	R	L	L	R	E	H	E	E	K	F	G	E	K	G	I	I	V	A	P	Y	D	T	E	L	F	G
Template Known Secondary structure		T	T	S	B		S	S				T	T	T					B	B			S	S	S	S	S	T	T	S			B																																	S	S										G	G	G	B	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	E	V	E	G	C	A	Y	Q	H	N	F	V	D	L	L	K	R	A	A	Q	E	G	V	T	F	C	P	L	S	E	L	L	S	E	T	L	P	L	G	Q	V	V	R	G	N	I	A	G
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		H	W	W	F	E	G	.	.	.	V	K	W	L	G	R	V	L	E	L	L	Y	Q	R	G	V	E	T	P	T	L	S	R	F	L	E	E	Y	S	G	E	K	H	E	I	E	L	P	E	G	S
Template Known Secondary structure		T	T	B	T	T		.	.	.														T	T		B										S			S									S	B
Template Predicted Secondary structure								.	.	.
Template SS confidence
		360	.	.	.	.	.				.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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