 |
Job Description | P76472 | Confidence | 20.66% | Date | Wed Jan 25 15:21:08 GMT 2012 |
Rank | 58 | Aligned Residues | 26 |
% Identity | 12% | Template | c2k6xA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:rna polymerase sigma factor rpod; |
PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure
|
Resolution | UNK |
|
  |   |
243 | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | N | F | V | D | L | L | K | R | A | A | Q | E | G | V | T | F | C | P | L | S | E | L | L | S | E | T | L | P |
Query Conservation |   |
  |
|
|   |   |
|
|   |   |
|   |   |   |
|
|   |
|
|
|
|   |
|
|
|   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |
|
|   |   |
|
|
|
|
| . | . |
|
|
|
|
|
| . |
|
|
|   |
|
|
Template Sequence |   |
R | R | I | K | K | L | I | S | L | G | K | K | K | G | . |
. |
Y | I | T | Y | E | D | . |
I | D | K | A | F | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | S | . | . | S |
| B |  |  |  | . |  |  |  |  |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  | . |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
. | . | . | 50 | . | . | |
. | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|