Return to main results Retrieve Phyre Job Id

Job DescriptionP76472
Confidence20.66%DateWed Jan 25 15:21:08 GMT 2012
Rank58Aligned Residues26
% Identity12%Templatec2k6xA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   243......250.........260.........270.
Predicted Secondary structure 


Query SS confidence 




























Query Sequence  HNFVDLLKRAAQEGVTFCPLSELLSETLP
Query Conservation   

  

  
   

 



 


 
 

Alig confidence 













..





.





Template Conservation    

 

  




..





.


 

Template Sequence  RRIKKLISLGKKKG. . YITYED. IDKAFP
Template Known Secondary structure  S..S
B.
S
Template Predicted Secondary structure 

..


.

Template SS confidence 




























   33......40...... ...50.. ......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions