Job Description P76472 Confidence 98.28% Date Wed Jan 25 15:21:08 GMT 2012 Rank 24 Aligned Residues 184 % Identity 18% Template c1ufaA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tt1467 protein; PDBTitle: crystal structure of tt1467 from thermus thermophilus hb8 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		91	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																						.																																							.	.	.	.	.	.	.	.	.
Query SS confidence												.																						.																																							.	.	.	.	.	.	.	.	.
Query Sequence		A	D	I	I	R	E	A	A	K	H	.	H	E	V	G	L	H	A	W	D	H	H	A	W	Q	A	R	S	G	N	W	D	.	R	Q	T	M	I	D	D	I	A	R	G	L	R	T	L	E	E	I	I	G	Q	P	V	T	C	S	A	A	A	G	W	R	A	D	Q	K	V	I	.	.	.	.	.	.	.	.	.
Query Conservation												.																						.																																							.	.	.	.	.	.	.	.	.
Alig confidence												.											.	.	.	.								.																																							.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		A	A	F	R	K	A	E	E	G	G	Q	V	E	L	I	T	S	N	A	T	H	.	.	.	.	G	Y	S	P	L	L	G	Y	D	E	A	L	W	A	Q	I	K	T	G	V	S	T	Y	R	R	H	F	A	K	D	P	T	G	F	W	L	P	E	X	A	Y	R	P	K	G	P	W	K	P	P	V	E	G	P	P
Template Known Secondary structure											T	S								T	T		.	.	.	.	B		G	G	G		S																					S	S				B				G	G	G		B			S						S	S	S	S	S
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
										160	.	.	.	.	.	.	.	.	.	170	.	.	.	.													.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	E	A	K	E	A	F	H	L	R	Y	N	S	D	C	R	.	.	.	.	.	.	.	.	.	.	.	.	G	A	M	P	F	R	P	L	L	E	S	G	N	P	G	T	A	Q	I	P	V	T	L	P	T	W	D	E	V	I	G	R	D	V	K	A	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	V	R	P	G	V	D	E	L	L	X	R	A	G	I	R	Y	T	F	V	D	A	H	L	V	Q	G	G	E	P	L	S	P	V	E	S	Q	E	A	T	Y	H	V	H	E	L	E	S	G	L	R	V	L	A	R	N	P	E	T	T	L	Q	V	W	S	A	D	Y	G	Y	P	G	E	G	L	Y	R	E	F
Template Known Secondary structure															T	T														S										G	G	G	G	S					T	T	S						B											T	T	T	S	G	G	G	S	T	T	S	B		S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
																																									211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.						.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	F	N	G	W	L	L	N	R	I	L	R	D	K	G	T	P	V	Y	T	I	H	A	E	V	E	G	C	A	Y	Q	.	.	.	.	.	H	N	F	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation
Template Sequence		H	R	K	D	P	L	S	G	L	H	H	W	R	V	T	H	R	K	A	D	L	A	E	K	A	P	Y	D	P	E	A	A	F	A	K	T	E	E	H	A	R	H	F	V	G	L	L	E	R	L	A	G	R	H	P	E	G	V	I	L	S	P	Y	D	A	E	L	F	G	H	W	W	Y	E	G	V	A	W	L	E
Template Known Secondary structure		S				T	T	T										S	S			G	G	G																																T	T									G	G	G	B	T	T	T	B	T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		D	L	L	K	R	A	A	Q	E	.	G	V	T	F	C	P	L	S	E	L	L	S	E	T	L	P	L	G	Q	V	V	R	G
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		A	V	L	R	L	L	A	Q	N	P	K	V	R	P	V	T	A	R	E	A	V	Q	G	P	A	V	R	T	A	L	P	E	G
Template Known Secondary structure									T		S	S										T		S									S	B
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions