Job Description P76472 Confidence 99.03% Date Wed Jan 25 15:21:08 GMT 2012 Rank 18 Aligned Residues 231 % Identity 16% Template c1k1yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.												.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		M	T	K	V	G	L	R	I	D	V	D	T	F	.	.	.	.	.	.	.	.	.	.	.	R	G	T	R	E	G	V	P	R	L	L	E	I	L	S	K	H	.	N	I	Q	A	S	I	F	F	S	V	G	P	D	N	M	G	R	H	L	W	R	L	V	K	P	Q	F	L	W	K	M	L	R	S	N	A	A	S
Query Conservation															.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	R	I	N	F	I	F	G	I	H	N	H	Q	P	L	G	N	F	G	W	V	F	E	E	A	Y	N	R	S	Y	R	P	F	M	E	I	L	E	E	F	P	E	M	K	V	N	V	H	F	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T													T										T		T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		L	Y	G	W	D	I	L	L	A	G	T	A	W	P	G	K	E	I	G	H	A	N	A	D	I	I	R	E	A	A	K	H	.	H	E	V	G	L	H	A	W	D	H	H	A	W	Q	A	R	S	G	N	W	D	R	Q	T	M	I	D	D	I	A	R	G	L	R	T	L	E	E	I	I	G	Q	P	V	T	C	S
Query Conservation																																		.
Alig confidence		.	.	.	.	.	.	.	.																									.											.	.	.	.																			.
Template Conservation		.	.	.	.	.	.	.	.																																				.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	P	L	L	E	W	I	E	E	N	K	P	D	Y	L	D	L	L	R	S	L	I	K	R	G	Q	L	E	I	V	V	A	G	F	Y	E	.	.	.	.	P	V	L	A	A	I	P	K	E	D	R	L	V	Q	I	E	M	L	.	K	D	Y	A	R	K	L	G	Y	D	A	K	G	V
Template Known Secondary structure		.	.	.	.	.	.	.	.																							T	T						B			T	T		.	.	.	.	B		G	G	G	S													.							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																				.	.	.	.																			.
Template SS confidence
										53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.										170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.															.
Query SS confidence																								.	.	.	.	.	.	.	.	.															.
Query Sequence		A	A	A	G	W	R	A	D	Q	K	V	I	E	A	K	E	A	F	H	L	R	Y	.	.	.	.	.	.	.	.	.	N	S	D	C	R	G	A	M	P	F	R	P	L	L	.	E	S	G	N	P	G	T	A	Q	I	P	V	T	L	P	T	W	D	E	V	I	G	R	D	V	K	A	E	D	F	N	G	W	L
Query Conservation																								.	.	.	.	.	.	.	.	.															.
Alig confidence																								.	.	.	.	.	.	.	.	.															.																									.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		W	L	T	E	R	V	W	Q	P	E	L	V	K	S	L	R	E	A	G	I	E	Y	V	V	V	D	D	Y	H	F	M	S	A	G	L	S	K	E	E	L	F	W	P	Y	Y	T	E	D	G	G	E	V	I	T	V	F	P	I	D	E	K	L	R	Y	L	I	P	F	R	P	.	.	.	V	K	K	T	I	E	Y
Template Known Secondary structure				G	G	G				T	T								T	T															T			G	G	G		S	S							T	T																T	T	T	S		.	.	.
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.											.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		L	N	R	I	L	R	D	K	G	T	P	V	Y	T	I	H	A	E	V	E	.	.	.	.	.	.	.	.	.	.	G	C	A	Y	Q	H	N	F	V	D	L	L	K	R	A	A	Q	.	E	G	V	T	F	C	P	L	S	E	L	L	S	E	T	L	P	L	G	Q	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		L	E	S	L	T	S	D	D	P	S	K	V	A	V	F	H	D	D	G	E	K	F	G	V	W	P	G	T	Y	E	W	V	Y	E	K	G	W	L	R	E	F	F	D	A	I	T	S	N	E	K	I	N	L	M	T	Y	S	E	Y	L	S	K	F	T	P	R	G	L	V
Template Known Secondary structure								S		T	T									G	G	G	T	T	T	S	T	T						T	T	T												S		T	T																		B
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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