Job Description P68398 Confidence 96.97% Date Thu Jan 5 12:11:02 GMT 2012 Rank 33 Aligned Residues 85 % Identity 25% Template c3g8qA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:predicted rna-binding protein, contains thump PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea Resolution 2.40 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	V	P	V	G	A	V	L	V	H	N	N	R	V	I	G	E	G	W	N	R	P	I	G	R	H	D	P	T	A	H	A	E	I	M	A	L	R	Q	G	G	L	V	M	Q	N	Y	R	L	I	D	A	T	L	Y	V	T	L	E	P	C	V	M	C	A	G	A	M	I	H	S	R	I	G	R	V	V	F	G
Query Conservation
Alig confidence																								.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Sequence		P	K	R	T	V	T	A	A	L	L	E	G	G	E	I	V	A	V	E	E	A	D	.	.	.	.	.	.	.	D	E	H	A	E	R	K	L	V	R	.	.	.	.	.	.	.	R	H	D	V	E	G	K	V	V	F	V	T	A	R	P	C	L	Y	C	A	R	E	L	A	E	A	G	V	A	G	V	V	Y	L
Template Known Secondary structure				S	S								T	T									S	.	.	.	.	.	.	.	S	S									.	.	.	.	.	.	.		S			T	T						S	S												T	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50	.								.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	D	A	K	T	G	A	A	G	S	L	M	D	V	L	H	H	P	G	M	N	H	R	V	E	I	T
Query Conservation
Alig confidence		.	.	.	.	.																.	.	.	.
Template Conservation		.	.	.	.	.																.	.	.	.
Template Sequence		.	.	.	.	.	G	R	G	R	G	L	G	P	Y	Y	L	A	R	S	G	.	.	.	.	V	E	V	V
Template Known Secondary structure		.	.	.	.	.			S	S									T	T	T	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																.	.	.	.
Template SS confidence
							86	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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