Job Description P30131 Confidence 100.00% Date Thu Jan 5 11:45:52 GMT 2012 Rank 1 Aligned Residues 646 % Identity 98% Template c3tsuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate Resolution 1.92 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	V	P	D	A	A	T	C	P	A	C	L	A	E	M	N	T	P	G	E	R	R	Y	R	Y	P	F	I	N	C	T	H	C	G	P	R	F	T	I	I	R	A	M	P	Y	D	R	P	F	T	V	M	A	A	F	P	L	C	P	A	C	D	K	E	Y	R	D	P	L	D	R	R	F	H	A	Q	P	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	V	P	D	A	A	T	C	P	A	C	L	A	E	M	N	T	P	G	E	R	R	Y	R	Y	P	F	I	N	C	T	H	C	G	P	R	F	T	I	I	R	A	M	P	Y	D	R	P	F	T	V	M	A	A	F	P	L	C	P	A	C	D	K	E	Y	R	D	P	L	D	R	R	F	H	A	Q	P	V	A
Template Known Secondary structure							B												S	T	T		T	T	T	T		T	T			B	T	T	B	B		S	G	G	G	B	S	S	S	S	S	S	G	G	G	B	G	G	G	G	S				G	G	G	S	T	T	T	S		S	S	S	T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		C	P	E	C	G	P	H	L	E	W	V	S	H	G	E	H	A	E	Q	E	A	A	L	Q	A	A	I	A	Q	L	K	M	G	K	I	V	A	I	K	G	I	G	G	F	H	L	A	C	D	A	R	N	S	N	A	V	A	T	L	R	A	R	K	H	R	P	A	K	P	L	A	V	M	L	P	V	A	D	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	P	E	C	G	P	Y	L	E	W	V	S	H	G	E	H	A	E	Q	E	A	A	L	Q	A	A	I	A	Q	L	K	M	G	N	I	V	A	I	K	G	I	G	G	F	H	L	A	C	D	A	R	N	S	N	A	V	A	T	L	R	A	R	K	H	R	P	A	K	P	L	A	V	M	L	P	V	A	D	G	L
Template Known Secondary structure			T	T	T	S								T	T																		T	T								S	S	S							T	T															S	S	S							S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	A	A	R	Q	L	L	T	T	P	A	A	P	I	V	L	V	D	K	K	Y	V	P	E	L	C	D	D	I	A	P	D	L	N	E	V	G	V	M	L	P	A	N	P	L	Q	H	L	L	L	Q	E	L	Q	C	P	L	V	M	T	S	G	N	L	S	G	K	P	P	A	I	S	N	E	Q	A	L	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	A	A	R	Q	L	L	T	T	P	A	A	P	I	V	L	V	D	K	K	Y	V	P	E	L	C	D	D	I	A	P	G	L	N	E	V	G	V	M	L	P	A	N	P	L	Q	H	L	L	L	Q	E	L	Q	C	P	L	V	M	T	S	G	N	L	S	G	K	P	P	A	I	S	N	E	Q	A	L	E	D
Template Known Secondary structure										T	S	T	T								G	G	G		T	T	S		T	T	S	S	T	T		S									S												S							S	S	S	T	T	S					S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	G	I	A	D	G	F	L	I	H	N	R	D	I	V	Q	R	M	D	D	S	V	V	R	E	S	G	E	M	L	R	R	S	R	G	Y	V	P	D	A	L	A	L	P	P	G	F	K	N	V	P	P	V	L	C	L	G	A	D	L	K	N	T	F	C	L	V	R	G	E	Q	A	V	L	S	Q	H	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	G	I	A	D	G	F	L	I	H	N	R	D	I	V	Q	R	M	D	D	S	V	V	R	E	S	G	E	M	L	R	R	S	R	G	Y	V	P	D	A	L	A	L	P	P	G	F	K	N	V	P	P	V	L	C	L	G	A	D	L	K	N	T	F	C	L	V	R	G	E	Q	V	V	L	S	Q	H	L	G
Template Known Secondary structure		T	T	T	T		S						S	S				S									T	T	S							T	T	T	T	T							T	T			S										S	S	S	B								T									B
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	S	D	D	G	I	Q	M	Q	W	R	E	A	L	R	L	M	Q	N	I	Y	D	F	T	P	Q	Y	V	V	H	D	A	H	P	G	Y	V	S	S	Q	W	A	R	E	M	N	L	P	T	Q	T	V	L	H	H	H	A	H	A	A	A	C	L	A	E	H	Q	W	P	L	D	G	G	D	V	I	A	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	S	D	D	G	I	Q	T	Q	W	R	E	A	L	R	L	M	Q	N	I	Y	N	F	T	P	Q	Y	V	V	H	D	A	H	P	G	Y	V	S	C	Q	W	A	S	E	M	N	L	P	T	Q	T	V	L	H	H	H	A	H	A	A	A	C	L	A	E	H	Q	W	P	L	D	G	G	D	V	I	A	L	T
Template Known Secondary structure			T	T	S	S	S																	T				S						S		T	T									T	S		S																			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	G	I	G	M	G	E	N	G	A	L	W	G	G	E	C	L	R	V	N	Y	R	E	C	E	H	L	G	G	L	P	A	V	A	L	P	G	G	D	L	A	A	K	Q	P	W	R	N	L	L	A	Q	C	L	R	F	V	P	E	W	Q	N	Y	S	E	T	A	S	V	Q	Q	Q	N	W	S	V	L	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	G	I	G	M	G	E	N	G	A	L	W	G	G	E	C	L	R	V	N	Y	R	E	C	E	H	L	G	G	L	P	A	V	A	L	P	G	G	D	L	A	A	K	Q	P	W	R	N	L	L	A	Q	C	L	R	F	V	P	E	W	Q	N	Y	P	E	T	A	S	V	A	A	A	N	W	S	V	L	A	R
Template Known Secondary structure									G	G	G												S	S								S						T	T	G	G	G	G	G	T		T													T	T	G	G	G	S	G	G	G					T	S		T
Template Predicted Secondary structure
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	E	R	G	I	N	A	P	L	A	S	S	C	G	R	F	F	D	A	V	A	A	A	L	G	C	A	P	A	T	L	S	Y	E	G	E	A	A	C	A	L	E	A	L	A	A	S	C	H	G	V	T	H	P	V	T	M	P	R	V	D	N	Q	L	D	L	A	T	F	W	Q	Q	W	L	N	W	Q	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	E	R	G	I	N	A	P	L	A	S	S	C	G	R	L	F	D	A	V	A	A	A	L	G	C	A	P	A	T	L	S	Y	E	G	E	A	A	C	A	L	E	A	L	A	A	S	C	D	G	V	T	H	P	V	T	M	P	R	V	D	N	Q	L	D	L	A	T	F	W	Q	Q	W	L	N	W	Q	A	P
Template Known Secondary structure						T	S	S																			T		S		S	S		S	S	T	T												T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
		661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	Q	R	A	W	A	F	H	D	A	L	A	Q	G	F	A	A	L	M	R	E	Q	A	T	M	R	G	I	T	T	L	V	F	S	G	G	V	I	H	N	R	L	L	R	A	R	L	A	H	Y	L	A	D	F	T	L	L	F	P	Q	S	L	P	A	G	D	G	G	L	S	L	G	Q	G	V	I	A	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	Q	R	A	W	A	F	H	D	A	L	A	Q	G	F	A	A	L	M	R	E	Q	A	T	M	R	G	I	T	T	L	V	F	S	G	G	V	I	H	N	R	L	L	R	A	R	L	A	H	Y	L	A	D	F	T	L	L	F	P	Q	S	L	P	A	G	D	G	G	L	S	L	G	Q	G	V	I	A	A	A
Template Known Secondary structure																												T	T								S	G	G	G	G												T	T	T	S							S	S		S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740
		741	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	W	L	A	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	W	L	A	G	E
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		741	.	.	.	.	.