Job Description P30131 Confidence 99.97% Date Thu Jan 5 11:45:52 GMT 2012 Rank 6 Aligned Residues 274 % Identity 18% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		394	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.											.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.				.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																												.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence						.																												.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		V	L	C	L	.	G	A	D	L	K	N	T	F	C	L	V	R	G	E	Q	A	V	L	S	Q	H	L	G	D	L	S	D	.	.	.	.	.	.	.	.	.	.	D	G	I	Q	M	Q	W	R	E	A	L	R	L	M	Q	N	I	Y	D	F	T	.	.	.	P	Q	Y	V	V	H	D	A	H	P	G	Y	V	S
Query Conservation						.																												.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence						.																												.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		A	L	G	I	E	G	T	A	H	T	L	G	I	G	I	V	S	E	D	K	V	L	A	N	V	F	D	T	L	T	T	E	K	G	G	I	H	P	K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I	A	F	S	Q	G	P	G	L	G	P
Template Known Secondary structure								S	S	S									S	S													S	S		S																										T			T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		460										.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		S	.	.	.	.	.	.	.	.	.	Q	W	A	R	E	M	N	L	P	T	Q	T	V	L	H	H	H	A	H	A	A	A	C	L	A	E	H	Q	W	P	L	D	G	G	D	V	I	A	L	T	L	D	G	I	G	M	G	E	N	G	A	L	W	G	G	E	C	L	R	V	N	Y	R	E	C	E	H	L	G	G
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																														.	.	.	.											.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																									.	.	.	.											.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		A	L	R	V	V	A	T	A	A	R	A	L	A	V	K	Y	R	K	P	I	V	G	V	N	H	C	I	A	H	V	E	I	T	K	M	F	G	V	K	.	.	.	.	D	P	V	G	L	Y	V	S	G	G	.	.	.	.	.	.	.	.	.	.	N	T	Q	V	L	A	L	E	G	G	R	Y	R	V	F	.	.
Template Known Secondary structure																	T	T															G	G	G	G	G	T			.	.	.	.	S								S	S	.	.	.	.	.	.	.	.	.	.									T	T						.	.
Template Predicted Secondary structure																																									.	.	.	.											.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	A	V	A	L	P	G	G	D	L	A	A	K	Q	P	W	R	N	L	L	A	Q	C	L	R	F	V	P	E	W	Q	N	Y	S	E	T	A	S	V	Q	Q	Q	N	W	S	V	L	A	R	A	I	E	R	G	I	N	A	P	L	A	S	S	C	G	R	F	F	D	A	V	A	A	A	L	G	C	A	P	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	T	L	D	I	G	I	G	N	A	I	D	V	F	A	R	E	L	G	L	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B	S	S	S													T	T		.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
																																																										147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.					.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		T	L	S	Y	E	G	E	A	A	C	A	L	E	A	L	A	A	S	C	H	G	V	T	H	P	V	T	M	P	R	V	D	N	Q	L	D	L	A	T	F	W	Q	Q	W	L	N	W	.	.	.	.	Q	A	P	V	N	Q	R	A	W	A	F	H	D	A	L	A	Q	G	F	A	A	L	M	R	E	Q	A	T	M
Query Conservation																																																	.	.	.	.
Alig confidence		.	.							.	.												.																										.	.	.	.
Template Conservation		.	.							.	.												.
Template Sequence		.	.	G	F	P	G	G	P	.	.	K	V	E	K	L	A	E	K	G	E	K	.	Y	I	E	L	P	Y	A	V	K	G	M	D	L	S	F	S	G	L	L	T	E	A	I	R	K	Y	R	S	G	K	Y	R	V	E	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E	V	T	E	R	A	V	A	H
Template Known Secondary structure		.	.		S	S				.	.								T			S	.										T	T																	T			S
Template Predicted Secondary structure		.	.							.	.												.
Template SS confidence
				168	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.			.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		R	G	I	T	T	L	V	F	S	G	G	V	I	H	N	R	L	L	R	A	R	L	A	H	Y	L	A	.	.	D	F	T	L	L	F	P	Q	S	L	P	A	G	D	G	G	L	S	L	G	Q	G	V	I	A	A	A	R	W	L	A	G	E	V	Q	N
Query Conservation																													.	.
Alig confidence																													.	.																				.	.
Template Conservation																																																		.	.
Template Sequence		T	E	K	D	E	V	V	L	V	G	G	V	A	A	N	N	R	L	R	E	M	L	R	I	M	T	E	D	R	G	I	K	F	F	V	P	P	Y	D	L	C	R	D	N	G	A	M	I	.	.	A	Y	T	G	L	R	M	Y	K	A	G	I	S	F	R
Template Known Secondary structure					S						S	G	G	G	G																T								G	G	G	T	S	S		S				.	.										T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions