Job Description P30131 Confidence 99.97% Date Thu Jan 5 11:45:52 GMT 2012 Rank 5 Aligned Residues 266 % Identity 20% Template c2eqaA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii Resolution 1.80 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.								260
Predicted Secondary structure																																																													.													.	.	.	.	.	.	.
Query SS confidence																																																													.													.	.	.	.	.	.	.
Query Sequence		E	W	V	S	H	G	E	H	A	E	Q	E	A	A	L	Q	A	A	I	A	Q	L	K	M	G	K	I	V	A	I	K	G	I	G	G	F	H	L	A	C	D	A	R	N	S	N	A	V	A	T	L	R	A	R	K	H	R	P	A	.	K	P	L	A	V	M	L	P	V	A	D	G	.	.	.	.	.	.	.	L
Query Conservation																																																													.													.	.	.	.	.	.	.
Alig confidence																																																													.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	I	K	I	D	P	L	N	P	E	I	D	K	I	K	I	A	A	D	V	I	R	N	G	G	T	V	A	F	P	T	E	T	V	Y	G	L	G	A	N	A	F	D	G	N	A	C	L	K	I	F	Q	A	K	N	R	P	V	D	N	P	L	I	V	H	I	A	D	F	N	Q	L	F	E	V	A	K	D	I
Template Known Secondary structure								S	S	S															T	T								S	S	S							T	T													T			T	T	S							S	S										S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		261	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		P	D	A	A	R	Q	L	L	T	T	.	P	A	A	P	I	V	L	V	D	K	K	Y	V	P	E	L	C	D	D	I	A	P	D	L	N	E	V	G	V	M	L	P	A	N	P	L	Q	H	L	L	L	Q	E	L	Q	C	P	L	V	M	T	S	G	N	L	S	G	K	P	P	A	I	S	N	E	Q	A	L	A
Query Conservation												.
Alig confidence												.															.
Template Conservation																											.
Template Sequence		P	D	K	V	L	E	I	A	Q	I	V	W	P	G	P	L	T	F	V	L	K	K	T	E	R	.	V	P	K	E	V	T	A	G	L	D	T	V	A	V	R	X	P	A	H	P	I	A	L	Q	L	I	R	E	S	G	V	P	I	A	A	P	S	A	N	L	A	T	R	P	S	P	T	K	A	E	D	V	I	V
Template Known Secondary structure														S	S	S									T	T	.	S						T	T		S																				T	S						B	S	S		T	T	S					S
Template Predicted Secondary structure																											.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.																		.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																												.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		D	L	Q	G	I	A	D	G	F	L	I	H	N	R	D	I	V	Q	R	M	D	D	S	V	V	R	.	.	E	S	G	E	M	L	R	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	Y	V	P	.	D	A	L	A	L	P	P	G	F	K	N	V	P	P	V	L	C	L	G	A
Query Conservation																												.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence																.												.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation																.
Template Sequence		D	L	N	G	R	V	D	V	I	I	D	G	G	H	.	T	F	F	G	V	E	S	T	I	I	N	V	T	V	E	P	V	L	L	R	P	G	P	F	T	I	E	E	L	K	K	L	F	G	E	I	V	I	Y	K	H	Y	A	P	N	T	R	L	L	L	V	E	N	R	N	I	F	K	D	V	V	S	L	L	S
Template Known Secondary structure				T	T	T	S	S								.		S	S		S								S										S	S										T	T		B						S		S	S								G	G	G									T
Template Predicted Secondary structure																.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure																							.	.																.
Query SS confidence																							.	.																.
Query Sequence		D	L	K	N	T	F	C	L	V	R	G	E	Q	A	V	L	S	Q	H	L	G	.	.	D	L	S	D	D	G	I	Q	M	Q	W	R	E	A	L	.	R	L	M	Q	N	I	Y	D	F	T	P	Q	Y	V	V	H	D	A	H	P	G
Query Conservation																							.	.																.
Alig confidence																							.	.																.
Template Conservation
Template Sequence		K	K	Y	K	V	A	L	L	I	P	K	E	L	S	K	E	F	E	G	L	Q	Q	I	I	L	G	S	D	E	N	L	Y	E	V	A	R	N	L	F	D	S	F	R	E	L	D	K	L	N	V	D	L	G	I	X	I	G	F	P	E
Template Known Secondary structure		T	T	S								G	G	G	T	G	G	G	T	T	S								T	T																			S			S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions