Job Description P33362 Confidence 30.44% Date Thu Jan 5 11:52:05 GMT 2012 Rank 147 Aligned Residues 249 % Identity 13% Template c3pu5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																					.	.
Query SS confidence																				.																																					.	.
Query Sequence		A	A	S	P	V	K	V	G	S	K	I	D	T	E	G	A	L	L	.	G	N	I	I	L	Q	V	L	E	S	H	G	V	P	T	V	N	K	V	Q	L	G	T	T	P	V	V	R	G	A	I	T	S	G	E	L	.	.	D	I	Y	P	E	Y	T	G	N	G	A	F	F	F	K	D	E	N	D	A	A	W	K
Query Conservation																				.																																					.	.
Alig confidence																				.																																					.	.
Template Conservation
Template Sequence		A	D	D	H	I	Y	V	T	S	S	G	G	S	F	L	E	N	V	R	K	H	X	A	E	P	F	E	K	Q	S	G	V	K	V	T	L	V	P	G	T	N	P	A	H	A	L	K	I	L	S	S	R	G	T	P	P	Y	D	V	A	A	F	G	G	N	D	X	Y	R	L	I	R	A	K	K	L	A	Q	V	D
Template Known Secondary structure		T	T																				T																															S	S		S		S															T	T		B
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		N	A	Q	Q	G	Y	E	K	V	K	K	L	D	S	E	H	N	K	L	I	W	L	T	P	A	P	A	N	N	T	W	T	I	A	V	R	Q	D	V	A	E	K	N	K	L	T	S	L	A	D	L	S	R	Y	L	Q	E	G	.	.	.	G	T	F	K	L	A	A	S	A	E	F	I	E	R	A	D	A	L	P
Query Conservation																																																												.	.	.
Alig confidence																															.														.															.	.	.
Template Conservation																															.														.
Template Sequence		E	K	S	V	P	S	L	A	D	V	P	E	K	F	K	A	D	W	E	G	C	G	S	L	Y	D	Y	S	S	.	V	G	I	A	Y	R	P	D	K	I	Q	G	G	.	V	K	S	W	K	E	F	V	E	R	T	V	A	G	E	F	G	K	Q	V	F	F	N	N	L	S	S	N	V	R	G	A	E	V	L	S
Template Known Secondary structure		T	T	T		G	G	G	G	G	S		G	G	G	T	G	G	G	T	T	S						B			.							T	T	T	S	T	T		.		S	S											T	T	T	T	T							G	G	G	T	S	S
Template Predicted Secondary structure																															.														.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.															.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Query Sequence		A	F	E	K	A	Y	G	F	K	L	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	L	L	S	L	A	G	G	D	T	A	V	T	I	K	A	A	A	Q	Q	T	S	G	V	N	A	A	M	A	Y	G	T	.	.	.	D	G	P	V	A	A	L	G	L	Q	T	L	S	D	P	Q	G	V
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.																	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		X	F	G	K	I	Y	G	S	G	Y	G	D	I	E	A	S	I	A	T	L	E	R	X	K	P	H	I	F	K	F	F	T	A	F	N	D	P	V	.	.	.	.	.	V	L	L	T	S	G	E	G	A	I	G	P	G	W	D	G	R	T	F	I	A	E	D	S	T	K	G	X	V	K	W	V	D	P	T	E	G
Template Known Secondary structure								S	S	S	T	T													G	G	G							S	T	T				.	.	.	.	.						T	S		S																T	T	T	S	S						T	T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	I	Y	A	P	A	P	V	V	R	E	S	V	L	R	E	Y	P	Q	M	A	Q	W	L	Q	P	V	F	A	S	L	D	A	K	T	L	Q	Q	L	N	A	S	I
Query Conservation
Alig confidence																			.	.										.	.	.
Template Conservation																			.	.										.	.	.
Template Sequence		A	V	S	S	G	P	V	X	A	V	V	K	G	G	K	E	D	.	.	L	A	K	A	F	X	N	Y	A	.	.	.	L	G	E	E	A	Q	K	A	F	C	E	A	X
Template Known Secondary structure												B	T	T	S				.	.										.	.	.	T	S
Template Predicted Secondary structure																			.	.										.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions