Job Description P03813 Confidence 24.58% Date Thu Jan 5 10:58:00 GMT 2012 Rank 264 Aligned Residues 211 % Identity 14% Template d1guda_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.7

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L	C
Query Conservation
Alig confidence							.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Y	A	V	V	.	.	.	L	K	T	L	S	N	P	F	W	V	D	M	K	K	G	I	E	D	E	A	K	T	L	G	V	S	V	D	I	F	A	S	P	S	E	G	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	Q	L	Q	L	F	E	D	L	S	N	K	N	Y	K	G	I	A	F	A
Template Known Secondary structure							.	.	.		S		S	S	S																		T									S	S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.												T	S	S
Template Predicted Secondary structure							.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.				.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.														.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.																												.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure															.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence															.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		T	N	T	M	H	K	V	A	D	A	I	E	S	.	.	R	C	T	L	P	F	L	H	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	T	G	R	A	I	T	G	A	.	.	.	G	M	T	R	V	A	L	L	G	T	R	Y	T	M	E
Query Conservation															.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence															.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		P	L	S	S	V	N	L	V	M	P	V	A	R	A	W	K	K	G	I	Y	L	V	N	L	D	E	K	I	D	M	D	N	L	K	K	A	G	G	N	V	E	A	F	V	T	T	D	N	V	A	V	G	A	K	G	A	S	F	I	I	D	K	L	G	A	E	G	G	E	V	A	I	I	E	G	K	A	G	N	A
Template Known Secondary structure			S	S	S	S	T	T										T	T							S	S										T	T				S																							G	G	G										S	T	T
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		131	.	.						.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.											.	.																															.	.	.	.																		.	.
Query SS confidence					.	.	.	.	.											.	.																															.	.	.	.																		.	.
Query Sequence		Q	D	F	.	.	.	.	.	Y	R	G	R	L	T	E	Q	F	S	.	.	I	N	C	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	F	T	E	A	.	.	.	.	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	G	A	.	.	Q	G	V	I	F	G	C
Query Conservation					.	.	.	.	.											.	.																															.	.	.	.																		.	.
Alig confidence					.	.	.	.	.											.	.																															.	.	.	.																		.	.
Template Conservation
Template Sequence		S	G	E	A	R	R	N	G	A	T	E	A	F	K	K	A	S	Q	I	K	L	V	A	S	Q	P	A	D	W	D	R	I	K	A	L	D	V	A	T	N	V	L	Q	R	N	P	N	I	K	A	I	Y	C	A	N	D	T	M	A	M	G	V	A	Q	A	V	A	N	A	G	K	T	G	K	V	L	V	V	G	T
Template Known Secondary structure																T		T	T										T	T																	T	T							S	S														T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		T	E	I	G	L	L	V	P	E	E	R	S	.	.	.	V	L	P	V	F	D	T	A	A	I	H	A	E	D	A	V	A	F	M	L
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		D	G	I	P	E	A	R	K	M	V	E	A	G	Q	M	T	A	T	V	A	Q	N	P	A	D	I	G	A	T	G	L	K	L	M	V
Template Known Secondary structure		S												T	S	S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions