Job Description P03813 Confidence 69.92% Date Thu Jan 5 10:58:00 GMT 2012 Rank 83 Aligned Residues 207 % Identity 12% Template d1byka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L
Query Conservation
Alig confidence								.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	V	A	I	I	.	.	.	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L
Template Known Secondary structure								.	.	.		S		T	T																			T									T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T
Template Predicted Secondary structure								.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		C	T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	T	R	Y	T	M	.	.	.	.	.	.	E	Q	D	F	Y	R	G	R	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Alig confidence									.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation									.	.
Template Sequence		F	G	F	T	G	I	T	.	.	E	E	M	L	A	H	W	Q	S	S	L	V	L	L	A	R	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C
Template Known Secondary structure					T	T			.	.	T	T	T	S	G	G	G	S	S	S					S	S			S	S																						T	T											T	T	S	T	T	T	T
Template Predicted Secondary structure									.	.
Template SS confidence
		125	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		T	E	Q	F	S	I	N	C	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	F	T	.	.	.	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	G	A	Q	G	V	I	F	G	C	T	E	I	G	L	L	V	P	E	E	R	S	V	L	P	V	F	D
Query Conservation																																			.	.	.
Alig confidence					.																														.	.	.
Template Conservation					.
Template Sequence		K	A	H	.	K	L	H	P	V	A	A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	H	P	E	I	V	T	V	D
Template Known Secondary structure				T	.	T										S									S	G	G	G			T	T							S	S														T	T			S																	T	T	S				B
Template Predicted Secondary structure					.
Template SS confidence
		203	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
			216	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	A	A	I	H	A	E	D	A	V	A	F	M	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		P	G	Y	A	E	A	G	R	Q	A	A	C	Q	L	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions