Job Description P03813 Confidence 61.31% Date Thu Jan 5 10:58:00 GMT 2012 Rank 104 Aligned Residues 213 % Identity 13% Template c3qk7C_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 Resolution 2.70 Å

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		1	.	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		M	K	T	I	G	L	.	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I
Query Conservation								.
Alig confidence								.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	A	I	A	L	A	Y	P	S	R	P	R	V	L	N	N	S	T	F	L	E	X	I	S	W	I	G	I	E	L	G	K	R	G	L	D	L	L	L	I	P	D	E	P	G	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	S	L	I	H	L	V	E	T	R	R	V	D	A	L
Template Known Secondary structure											S	S	S	G	G	G																		T	T	T										T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T			S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Query Sequence		V	L	C	T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	H	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	T	.	.	.	.	.	R	Y	T	M	E	Q	D	F	Y	R
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation
Template Sequence		I	V	A	H	T	Q	P	E	D	F	R	L	Q	Y	L	Q	K	Q	N	F	P	F	L	A	L	G	R	S	H	L	P	K	P	Y	A	W	F	D	F	D	N	H	A	G	A	S	L	A	V	K	R	L	L	E	L	G	H	Q	R	I	A	F	V	S	T	D	A	R	I	S	Y	V	D	Q	R	L	Q	G	Y	V
Template Known Secondary structure					S			S	S										T	T							S					S	S																							T	T			S								S		S
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		136	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure									.	.	.																												.	.	.	.	.	.	.																				.
Query SS confidence									.	.	.																												.	.	.	.	.	.	.																				.
Query Sequence		G	R	L	T	E	Q	F	.	.	.	S	I	N	C	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	.	.	.	.	.	.	.	F	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	.	G	A	Q	G	V	I	F	G	C	T	E	I	G	L	L	V
Query Conservation									.	.	.																												.	.	.	.	.	.	.																				.
Alig confidence									.	.	.																												.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		Q	T	X	S	E	A	G	L	X	P	L	A	G	Y	L	Q	K	A	D	P	T	R	P	G	G	Y	L	A	A	S	R	L	L	A	L	E	V	P	P	T	A	I	I	T	D	C	N	X	L	G	D	G	V	A	S	A	L	D	K	A	G	L	L	G	G	E	G	I	S	L	I	A	Y	D	G	L	P	D	D	S
Template Known Secondary structure							T	T					T	T							S	S													T	S	S	S			S					S	S															T		B	S	T	T	S	B						T		S		T	T
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		P	E	E	R	S	V	L	P	V	F	.	D	T	A	A	I	H	A	E	D	A	V	A	F	M	L
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		L	L	D	I	A	V	T	P	I	V	Q	N	T	R	T	S	V	G	K	Q	I	A	S	X	I	C
Template Known Secondary structure				S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions