Job Description P03813 Confidence 56.50% Date Thu Jan 5 10:58:00 GMT 2012 Rank 116 Aligned Residues 207 % Identity 11% Template c3kkeA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L	C
Query Conservation
Alig confidence							.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	I	G	L	I	.	.	.	V	P	D	V	N	N	A	V	F	A	D	M	F	S	G	V	Q	M	A	A	S	G	H	S	T	D	V	L	L	G	Q	I	D	A	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	T	Q	Q	L	S	R	L	V	S	E	G	R	V	D	G	V	L	L	Q
Template Known Secondary structure							.	.	.		S		T	T	S	T	T															T	T										S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S		S	S	S
Template Predicted Secondary structure							.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	D	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	.	.	.	.	.	T	R	Y	T	M	E	Q	D	F	Y	R	G	R	L	T
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		R	R	E	D	F	D	D	D	M	L	A	A	V	L	E	G	V	P	A	V	T	I	N	S	R	V	P	G	R	V	G	S	V	I	L	D	D	Q	K	G	G	G	I	A	T	E	H	L	I	T	L	G	H	S	R	I	A	F	I	S	G	T	A	I	H	D	T	A	Q	R	R	K	E	G	Y	L	E	T	L	A
Template Known Secondary structure				T	T											T	T	S						S				T	T																							T	T			S						S		S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.														.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure									.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	F	S	I	N	C	.	.	.	.	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Q	F	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	G	A	Q	G	V	I	F	G	C	T	E	I	G	L
Query Conservation									.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.					.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		S	A	.	G	L	R	S	E	A	A	W	V	V	D	A	G	W	E	A	D	A	G	S	A	A	L	N	T	L	Y	R	G	A	N	L	G	K	P	D	G	P	T	A	V	V	V	A	S	V	N	A	A	V	G	A	L	S	T	A	L	R	L	G	L	R	V	P	E	D	L	S	I	V	G	I	N	T	T	W	V
Template Known Secondary structure			T	.	T					G	G	G						S	S																	T	T	S	T	T	S		S					S	S														T	T			T	T	T	T							S
Template Predicted Secondary structure				.
Template SS confidence
		205	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		L	V	P	E	E	R	S	V	L	P	V	F	D	.	T	A	A	I	H	A	E	D	A	V	A	F	M	L
Query Conservation															.
Alig confidence			.												.
Template Conservation			.
Template Sequence		S	.	D	T	V	Y	P	A	L	T	T	V	R	L	P	L	Q	R	L	G	E	V	A	A	D	V	L	M
Template Known Secondary structure			.			S	S	S
Template Predicted Secondary structure			.
Template SS confidence
		284		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions