Job Description P03813 Confidence 61.95% Date Thu Jan 5 10:58:00 GMT 2012 Rank 100 Aligned Residues 206 % Identity 15% Template c3jy6B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis Resolution 1.97 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L
Query Conservation
Alig confidence								.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	I	A	V	I	.	.	.	V	A	N	I	D	D	Y	F	S	T	E	L	F	K	G	I	S	S	I	L	E	S	R	G	Y	I	G	V	L	F	D	A	N	A	D	I	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	T	L	L	R	A	I	G	S	R	G	F	D	G	L	I	L
Template Known Secondary structure								.	.	.		S		T	T	S															G	G	G	T									T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T		S
Template Predicted Secondary structure								.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.																.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Query Sequence		C	T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	H	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	T	R	Y	T	M	E	Q	D	F	Y	R	G	R	L	T	E	.	.
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Alig confidence																	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation																	.
Template Sequence		Q	S	F	S	N	P	Q	T	V	Q	E	I	L	H	Q	.	Q	M	P	V	V	S	V	D	R	E	M	D	A	C	P	W	P	Q	V	V	T	D	N	F	E	A	A	K	A	A	T	T	A	F	R	Q	Q	G	Y	Q	H	V	V	V	L	T	S	E	L	E	L	S	R	T	R	Q	E	R	Y	R	G	I	L	A
Template Known Secondary structure			S	S	S										T	T	.	S	S						S				S	S		S	S																				T	T	T											G	G	G													T
Template Predicted Secondary structure																	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
					141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																														.	.	.	.	.	.	.																				.
Query SS confidence		.	.	.																														.	.	.	.	.	.	.																				.
Query Sequence		.	.	.	Q	F	S	I	N	C	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	.	.	.	.	.	.	.	F	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	.	G	A	Q	G	V	I	F	G	C	T	E	I	G	L	L	V	P	E	E	R	S
Query Conservation		.	.	.																														.	.	.	.	.	.	.																				.
Alig confidence		.	.	.																														.	.	.	.	.	.	.																				.																		.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		A	A	Q	D	V	D	V	L	E	V	S	E	S	S	Y	N	H	S	E	V	H	Q	R	L	T	Q	L	I	T	Q	N	D	Q	K	T	V	A	F	A	L	K	E	R	W	L	L	E	F	F	P	N	L	I	I	S	G	L	I	D	N	Q	T	V	T	A	T	G	F	A	D	T	D	F	I	R	R	.	.	.	M
Template Known Secondary structure		T		S									T	T	S																S	S		S							S	S															T	S			S	S	S						B				T	T	T	T	T	.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.
		210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		V	L	P	V	F	D	.	T	A	A	I	H	A	E	D	A	V	A	F	M	L
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		K	L	T	L	I	T	Q	N	P	F	L	M	G	A	S	S	A	E	I	M	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions