Job Description P03813 Confidence 46.48% Date Thu Jan 5 10:58:00 GMT 2012 Rank 141 Aligned Residues 135 % Identity 9% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L	C	T	N	T	M	H	K	.	V	A	D	A	I	E	S	R	C	T	L	P	F	L	H	I	A	D	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	T	R	Y	T	M	E	Q	D	F	Y	R	G	R	L	T	E
Query Conservation																													.
Alig confidence																													.																	.	.
Template Conservation																																														.	.
Template Sequence		F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	A	I	F	G	P	S	H	S	S	S	A	N	A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T	.	.	R	W	K	H	Q	V	S	D	N	K	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	L	V	Q	F
Template Known Secondary structure																	S						S	S														T	T			B				.	.	S						S	S					S					S	B		T	T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		141	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																									.	.	.	.	.
Query SS confidence								.	.																									.	.	.	.	.
Query Sequence		Q	F	S	I	N	C	.	.	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	F	.	.	.	.	.	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	G	A	Q	G	V	I	F	G	C	T
Query Conservation								.	.																									.	.	.	.	.
Alig confidence								.	.																									.	.	.	.	.
Template Conservation
Template Sequence		F	K	W	K	T	V	T	V	V	Y	D	D	S	T	G	L	I	R	L	Q	E	L	I	K	A	P	S	R	Y	N	L	R	L	K	I	R	Q	L	P	A	D	T	K	D	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	S
Template Known Secondary structure		T	T		S							S	S	T						S					T	G	G	G	T	S	S										S	S	G	G	G											T	T								S
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions