Job Description P03813 Confidence 89.47% Date Thu Jan 5 10:58:00 GMT 2012 Rank 43 Aligned Residues 208 % Identity 15% Template c3h5oB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		K	T	I	G	L	.	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V
Query Conservation							.
Alig confidence							.						.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	T	V	L	V	L	I	P	S	L	A	.	.	.	.	N	T	V	F	L	E	T	L	T	G	I	E	T	V	L	D	A	A	G	Y	Q	X	L	I	G	N	S	H	Y	D	A	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	Q	L	L	R	A	Y	L	Q	H	R	P	D	G	V	L
Template Known Secondary structure									S		S	T	.	.	.	.	T		T	T														T	T									T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T			S
Template Predicted Secondary structure													.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		L	C	T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	D	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	.	.	.	.	T	R	Y	T	M	E	Q	D	F	Y	R	G	R	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		I	T	G	L	S	H	A	E	P	F	E	R	I	L	S	Q	H	A	L	P	V	V	Y	X	X	D	L	A	D	D	G	R	C	C	V	G	F	S	Q	E	D	A	G	A	A	I	T	R	H	L	L	S	R	G	K	R	R	I	G	F	L	G	A	Q	L	D	E	R	V	X	K	R	L	D	G	Y	R	A	A	L
Template Known Secondary structure				S	S				T	T								T	T								S			S	S	S																						T	T			S							S
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		139	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.																										.	.	.	.	.	.	.																				.
Query SS confidence								.	.	.	.																										.	.	.	.	.	.	.																				.
Query Sequence		T	E	Q	F	S	I	.	.	.	.	N	C	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	.	.	.	.	.	.	.	F	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	.	G	A	Q	G	V	I	F	G	C	T	E	I	G	L	L	V	P	E
Query Conservation								.	.	.	.																										.	.	.	.	.	.	.																				.
Alig confidence								.	.	.	.																										.	.	.	.	.	.	.																				.																.
Template Conservation																																																																															.
Template Sequence		D	A	A	D	C	R	D	A	G	L	E	W	L	D	P	Q	P	S	S	X	Q	X	G	A	D	X	L	D	R	A	L	A	E	R	P	D	C	D	A	L	F	C	C	N	D	D	L	A	I	G	A	L	A	R	S	Q	Q	L	G	I	A	V	P	E	R	L	A	I	A	G	F	N	D	L	Q	P	A	.	A	W
Template Known Secondary structure					T				G	G	G						S																			T	T							S	S														T	T			T	T	T	T						S	B						.		T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290
		207	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		E	R	S	V	L	P	V	F	D	.	T	A	A	I	H	A	E	D	A	V	A	F	M	L
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		C	T	P	P	L	T	T	V	A	T	P	R	R	D	I	G	V	H	A	A	K	A	L	L
Template Known Secondary structure		S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions