Job Description P03813 Confidence 53.25% Date Thu Jan 5 10:58:00 GMT 2012 Rank 121 Aligned Residues 204 % Identity 12% Template c3gybB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum Resolution 1.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L
Query Conservation
Alig confidence									.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	I	A	V	L	I	.	.	.	D	D	Y	S	N	P	W	F	I	D	L	I	Q	S	L	S	D	V	L	T	P	K	G	Y	R	L	S	V	I	D	S	L	T	S	Q	A	G	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	T	S	A	L	S	X	R	P	D	G	I	I	I
Template Known Secondary structure									.	.	.	S		T	T	S	G	G	G												G	G	G	T								S	S	S	S		S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T			S
Template Predicted Secondary structure									.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.																	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.
Predicted Secondary structure																							.	.	.	.	.																							.	.	.																								.	.
Query SS confidence																							.	.	.	.	.																							.	.	.																								.	.
Query Sequence		C	T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	.	.	.	.	.	H	I	A	D	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	.	.	.	T	R	Y	T	M	E	Q	D	F	Y	R	G	R	L	T	E	Q	F	S	I	N	C	L	.	.	I	P	E	A
Query Conservation																							.	.	.	.	.																							.	.	.																								.	.
Alig confidence												.	.	.	.								.	.	.	.	.																							.	.	.																								.	.
Template Conservation												.	.	.	.
Template Sequence		A	Q	D	I	P	D	F	T	V	P	.	.	.	.	D	S	L	P	D	S	V	A	N	D	D	F	R	G	A	E	I	A	T	K	H	L	I	D	L	G	H	T	H	I	A	H	L	R	V	G	S	G	A	G	L	R	R	F	E	S	F	E	A	T	X	R	A	H	G	L	E	P	L	S	N	D	Y	L	G	P
Template Known Secondary structure				S	S	S	S	S				.	.	.	.	B																								T	T			S							S	S																	T	T										S
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																				.																												.
Query SS confidence																				.	.	.	.	.	.	.																				.																												.
Query Sequence		D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	.	.	.	.	.	.	.	F	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	.	G	A	Q	G	V	I	F	G	C	T	E	I	G	L	L	V	P	E	E	R	S	V	L	P	V	F	D	.	T	A	A	I	H	A	E
Query Conservation																				.	.	.	.	.	.	.																				.																												.
Alig confidence																				.	.	.	.	.	.	.																				.														.														.
Template Conservation																																																												.
Template Sequence		A	V	E	H	A	G	Y	T	E	T	L	A	L	L	K	E	H	P	E	V	T	A	I	F	S	S	N	D	I	T	A	I	G	A	L	G	A	A	R	E	L	G	L	R	V	P	E	D	L	S	I	I	G	Y	D	N	T	P	.	L	A	Q	T	R	L	I	N	L	T	T	I	D	D	N	S	I	G	V	G	Y
Template Known Secondary structure																			T	T							S	S															T			T	T	T	T							S				.				S	T	T	T
Template Predicted Secondary structure																																																												.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		223	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	V	A	F	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	A	L	L	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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