Job Description P03813 Confidence 86.25% Date Thu Jan 5 10:58:00 GMT 2012 Rank 50 Aligned Residues 208 % Identity 14% Template c3d8uA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 Resolution 2.88 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L	C
Query Conservation
Alig confidence							.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	A	L	I	.	.	.	I	P	S	L	F	E	K	A	C	A	H	F	L	P	S	F	Q	Q	A	L	N	K	A	G	Y	Q	L	L	L	G	Y	S	D	Y	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	E	E	K	L	L	S	T	F	L	E	S	R	P	A	G	V	V	L	F
Template Known Secondary structure							.	.	.		S		S	S																		T	S									T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	S
Template Predicted Secondary structure							.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	I	A	D	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	T	R	.	.	.	.	.	Y	T	M	E	Q	D	F	Y	R	G	R	L
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		G	S	E	H	S	Q	R	T	H	Q	L	L	E	A	S	N	T	P	V	L	E	I	A	E	L	S	S	K	A	S	Y	L	N	I	G	V	D	H	F	E	V	G	K	A	C	T	R	H	L	I	E	Q	G	F	K	N	V	G	F	I	G	A	R	G	N	H	S	T	L	Q	R	Q	L	H	G	W	Q	S	A	X
Template Known Secondary structure		S	S														T							S	S	S		S	S	S	S	S					B															T	T	T										S		S	S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		139	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.																												.	.	.	.	.	.	.																				.
Query SS confidence						.	.	.																												.	.	.	.	.	.	.																				.
Query Sequence		T	E	Q	F	.	.	.	S	I	N	C	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	.	.	.	.	.	.	.	F	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	.	G	A	Q	G	V	I	F	G	C	T	E	I	G	L	L	V	P	E	E
Query Conservation						.	.	.																												.	.	.	.	.	.	.																				.
Alig confidence						.	.	.																												.	.	.	.	.	.	.																				.																.
Template Conservation																																																																														.
Template Sequence		I	E	N	Y	L	T	P	D	H	F	L	T	T	H	E	A	P	S	S	Q	L	G	A	E	G	L	A	K	L	L	L	R	D	S	S	L	N	A	L	V	C	S	H	E	E	I	A	I	G	A	L	F	E	C	H	R	R	V	L	K	V	P	T	D	I	A	I	I	C	L	E	G	S	S	X	G	.	E	H	A
Template Known Secondary structure				T	T										S	S																T	T		T	T							S	S														T	T			T	T	T	T						S	S						.		T	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.
		208	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		R	S	V	L	P	V	F	D	.	T	A	A	I	H	A	E	D	A	V	A	F	M	L
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		Y	P	S	L	T	S	A	E	F	D	Y	E	R	X	G	T	K	A	A	E	K	L	L
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions