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Job DescriptionP03813
Confidence36.15%DateThu Jan 5 10:58:00 GMT 2012
Rank175Aligned Residues205
% Identity15%Templatec3ctpB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose
Resolution1.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  KTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVL
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Template Sequence  KTIGLM. . . VPNISNPFFNQMASVIEEYAKNKGYTLFLCNTDDDKEKEKTY. . . . . . . . . . . . . . . LEVLQSHRVAGIIA
Template Known Secondary structure 
...S
TTSTT

TT
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S
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   61..... ...70.........80.........90.........100........ .110.........120..
 
   82.......90.........100...... ...110.........120.... .....130........
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Query Sequence  CTNTMHKVADAIESRCTLPFLHIAD. . . . . . . . . . . . . . . . . . ATGRAITGAGMTRVALLG. . . . . TRYTMEQDFYRGRL
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Template Sequence  SRSQC. . . . EDEYANIDIPVVAFENHILDNIITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGA
Template Known Secondary structure  S


....SGGGTT

S
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TTS

TT

S

TT
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   123.... ..130.........140.........150.........160.........170.........180.........190........
 
   139140... ......150.........160......... 170.........180........ .190.........200.........
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Query Sequence  TEQFS. INCLIPEADERAKINQIIFEELCLGQ. . . . . . . FTEASRAYCAQVIARLAEQ. GAQGVIFGCTEIGLLVPEERS
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Template Sequence  RAKDLEIDFIEFQHDFQVKMLEEDINSMKDIVNYDGIFVFNDIAAATVMRALKKRGVSIPQEVQIIGFDNSF. IGELLYP
Template Known Secondary structure  TT



SSS

GGGGG


TTGGGGGGSSSSTT

TTTT

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   199200.........210.........220.........230.........240.........250.........260.........270 .......
 
   210..... ....220.........
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Query Sequence  VLPVFD. TAAIHAEDAVAFML
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Template Sequence  SLTTINQPIEALAYTIIELLI
Template Known Secondary structure 

B

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   278.280.........290........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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