Job Description P03813 Confidence 36.06% Date Thu Jan 5 10:58:00 GMT 2012 Rank 176 Aligned Residues 88 % Identity 11% Template c3brsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L	C
Query Conservation
Alig confidence							.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	M	I	C	I	.	P	K	V	L	D	D	S	S	D	F	W	S	V	L	V	E	G	A	Q	M	A	A	K	E	Y	E	I	K	L	E	F	M	A	P	E	K	E	E	D	Y	L	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	L	I	E	E	A	I	K	R	K	P	D	V	I	L	L	A
Template Known Secondary structure							.		S				S	S	S																		T									S	S	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.										T			S
Template Predicted Secondary structure							.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.														.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	.	.	T	L	P	F	L	H	I
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		A	A	D	Y	E	K	T	Y	D	A	A	K	E	I	K	D	A	G	I	K	L	I	V	I
Template Known Secondary structure			S		T	T	T	T					T	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions