Job Description P03813 Confidence 100.00% Date Thu Jan 5 10:58:00 GMT 2012 Rank 13 Aligned Residues 205 % Identity 16% Template c2jfzB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor Resolution 1.86 Å

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		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																																			.
Query SS confidence									.																																			.
Query Sequence		M	K	T	I	G	L	L	.	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	.	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G
Query Conservation									.																																			.
Alig confidence				.					.								.	.	.	.	.	.	.																					.						.	.	.	.	.	.	.
Template Conservation				.													.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Sequence		M	K	.	I	G	V	F	D	S	G	V	G	G	F	S	.	.	.	.	.	.	.	V	L	K	S	L	L	K	A	R	L	F	D	E	I	I	Y	Y	G	D	S	A	R	V	P	Y	G	.	.	.	.	.	.	.	T	K	D	P	T	T	I	K	Q	F	G	L	E	A	L	D	F	F	K	P	H	E	I	E	L
Template Known Secondary structure				.						S	S	G	G	G			.	.	.	.	.	.	.								T	T			S								T	T	T				T	.	.	.	.	.	.	.	T	S																	G	G	G	T		S
Template Predicted Secondary structure				.													.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.								.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		79	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure											.																													.	.	.
Query SS confidence											.																													.	.	.
Query Sequence		I	V	L	C	T	N	T	M	H	.	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	H	I	A	D	A	T	G	R	A	I	T	G	A	.	.	.	G	M	T	R	V	A	L	L	G	T	R	Y	T	M	E	Q	D	F	Y	R	G	R	L	T	E	Q	F	S	I	N	C	L	I	P	E	A	D	E	R
Query Conservation											.																													.	.	.
Alig confidence											.																													.	.	.																																.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.
Template Sequence		L	I	V	A	C	N	T	A	S	A	L	A	L	E	E	M	Q	K	Y	S	K	I	P	I	V	G	V	I	E	P	S	I	L	A	I	K	R	Q	V	E	D	K	N	A	P	I	L	V	L	G	T	K	A	T	I	Q	S	N	A	Y	D	N	A	L	K	Q	Q	G	Y	L	N	I	.	.	.	.	.	.	.	S
Template Known Secondary structure													T							T		S	S					S	S														T	T	S														T									T	T					.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.								.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.											210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	F	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	G	A	Q	G	V	I	F	G	C	T	E	I	G	L	L	V	P	E	E	R	S	.	.	.	.	.	.	.	.	.	.	V	L	P	V	F	D	T	A	A	I	H	A	E	D	A
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	A	T	S	L	F	V	P	L	I	E	E	S	I	L	E	G	E	L	L	E	T	C	M	H	Y	Y	F	T	P	L	E	I	L	P	E	V	I	I	L	G	C	T	H	F	P	L	I	A	Q	K	I	E	G	Y	F	M	G	H	F	A	L	P	T	P	P	L	L	I	H	S	G	D	A	I	V	E	Y	L
Template Known Secondary structure						T	T							T	T			S	S												T	T			S			S						S	T	T	G	G	G	G												S			S	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		225	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		219	220	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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