Job Description P03813 Confidence 92.74% Date Thu Jan 5 10:58:00 GMT 2012 Rank 33 Aligned Residues 210 % Identity 16% Template c2iksA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 Resolution 1.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L
Query Conservation
Alig confidence								.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	I	G	L	V	.	.	.	I	P	D	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	X	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V
Template Known Secondary structure								.	.	.		S		S		S																	T	T									T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T		S
Template Predicted Secondary structure								.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
			82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.
Predicted Secondary structure		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Query SS confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Query Sequence		.	C	T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	L	H	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	G	R	A	I	T	G	A	G	M	T	R	V	A	L	L	G	T	R	Y	T	.	.	.	.	.	.	M	E	Q	D	F	Y	R
Query Conservation		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Alig confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	S	L	P	P	E	H	P	F	Y	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	X	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T
Template Known Secondary structure				S	S		T	T						T	T	T	T	S	S	S							S				T	T	T																					T	S			S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170								.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.
Query Sequence		G	R	L	T	E	Q	F	S	I	N	C	L	I	P	E	A	D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	F	.	.	.	.	.	.	.	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	G	A	Q	G	V	I	F	G	C	T	E	I	G	L	L	V	P	E	E	R
Query Conservation																																					.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	W	K	D	D	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	X	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	X	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	L	L	D	F	L	Q
Template Known Secondary structure				T	T											S	S	S													T	T	T	S				S					S	S																S	S			S	S							S			G	G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		209	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		S	V	L	P	V	F	D	.	T	A	A	I	H	A	E	D	A	V	A	F	M	L
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		C	P	V	L	A	V	A	Q	R	H	R	D	V	A	E	R	V	L	E	I	V	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions