Job Description P03813 Confidence 82.59% Date Thu Jan 5 10:58:00 GMT 2012 Rank 56 Aligned Residues 180 % Identity 14% Template c2c4kD_ PDB info PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) Resolution 2.65 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	I	G	L	L	G	G	M	S	W	E	S	T	I	P	Y	Y	R	L	I	N	E	G	I	K	Q	R	L	G	G	L	H	S	A	Q	V	L	L	H	S	V	D	F	H	E	I	E	E	C	Q	R	R	G	E	W	D	K	T	G	D	I	L	A	E	A	A	L	G	L	Q	R	A	G	A	E	G	I	V	L
Query Conservation
Alig confidence																																																											.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		Q	D	I	F	I	I	Q	T	I	P	R	D	V	N	T	A	V	M	E	L	L	I	M	A	Y	A	L	K	T	A	C	A	R	N	I	I	G	V	I	P	Y	F	P	Y	S	K	Q	S	K	M	R	K	R	G	S	I	V	.	.	.	.	.	C	K	L	L	A	S	M	L	A	K	A	G	L	T	H	I	I	T
Template Known Secondary structure												S																			T	T		S							S	S		T	T	T	T	T	T	S			S	S	S				.	.	.	.	.											T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																						.	.																	.	.								.	.																												.	.	.	.
Query SS confidence																						.	.																	.	.								.	.																												.	.	.	.
Query Sequence		C	T	N	T	M	H	K	V	A	D	A	I	E	S	R	C	T	L	P	F	.	.	L	H	I	A	D	A	T	G	R	A	I	T	G	A	G	M	.	.	T	R	V	A	L	L	G	.	.	T	R	Y	T	M	E	Q	D	F	Y	R	G	R	L	T	E	Q	F	S	I	N	C	L	I	P	E	A	.	.	.	.
Query Conservation																						.	.																	.	.								.	.																												.	.	.	.
Alig confidence							.	.	.	.												.	.																	.	.								.	.															.	.												.	.	.	.
Template Conservation							.	.	.	.																																																							.	.
Template Sequence		M	D	L	H	Q	.	.	.	.	K	E	I	Q	G	F	F	S	F	P	V	D	N	L	R	A	S	P	F	L	L	Q	Y	I	Q	E	E	I	P	N	Y	R	N	A	V	I	V	A	K	S	P	D	A	A	K	R	A	Q	S	Y	A	E	R	L	.	.	R	L	G	L	A	V	I	H	P	P	I	T	V	V	G
Template Known Secondary structure			S		S	S	.	.	.	.	G	G	G	G	G	S		S	S																			S	T	T	G	G	G						S	S	G	G	G												.	.	T														S
Template Predicted Secondary structure							.	.	.	.																																																							.	.
Template SS confidence
		133	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	R	A	K	I	N	Q	I	I	F	E	E	L	C	L	G	Q	F	T	E	A	S	R	A	Y	C	A	Q	V	I	A	R	L	A	E	Q	G	A	Q	G	V	I	F	G	C	T	E
Query Conservation
Alig confidence																					.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		D	V	G	G	R	I	A	I	I	V	D	D	I	I	D	D	V	E	S	.	.	.	.	.	.	.	F	V	A	A	A	E	I	L	K	E	R	G	A	Y	K	I	Y	V	M	A	T	H
Template Known Secondary structure				T	T								S			S	S	T			.	.	.	.	.	.	.										T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions