Job Description P23839 Confidence 4.75% Date Thu Jan 5 11:39:44 GMT 2012 Rank 85 Aligned Residues 65 % Identity 18% Template d1js9c_ SCOP info Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Bromoviridae-like VP Resolution 3.40

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.									.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.
Query Sequence		A	Y	A	R	R	E	I	K	G	E	W	G	S	A	T	.	.	.	.	.	.	.	.	W	E	M	R	S	V	N	Q	R	Y	L	E	T	Y	F	R	L	P	E	Q	F	R	S	L	E	P	V	V	R	E	R	I	R	S	R	L	T	R	G	K	V	E	C	T	L	R	Y	E	P	D	V	S	A	Q	G	E	L
Query Conservation																	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.									.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		G	Q	G	K	A	I	K	A	I	A	G	Y	S	I	S	K	W	E	A	S	S	D	A	I	T	A	K	A	T	N	A	.	.	.	.	M	S	I	T	L	P	H	E	L	S	S	.	.	.	.	.	.	.	E	K	N	K	E	L	K	V	G	R	V	L	L	W	L	G	L	L	P	S	V	A	G	R	I	K	A
Template Known Secondary structure		T		S							T	T							B						B		S	S					.	.	.	.							T	T	T		S	.	.	.	.	.	.	.					T												B		S	S		S	S
Template Predicted Secondary structure																																	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		79	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	V	A	E
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions