Job Description P23839 Confidence 7.48% Date Thu Jan 5 11:39:44 GMT 2012 Rank 34 Aligned Residues 77 % Identity 22% Template c2zkqi_ PDB info PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		T	A	Y	A	R	R	E	I	K	G	E	W	G	S	A	T	W	E	M	R	S	V	N	Q	R	Y	L	E	T	Y	F	R	L	P	E	Q	F	R	S	L	E	P	V	V	R	E	R	I	R	S	R	L	T	R	.	G	K	V	E	C	T	L	R	Y	E	P	D	V	S	A	Q	G	E	L	I	L	N	E	K	L
Query Conservation																																																								.
Alig confidence																	.	.	.	.	.												.	.					.	.																.
Template Conservation																	.	.	.	.	.												.	.					.	.
Template Sequence		T	A	T	A	V	A	H	C	K	R	G	N	G	L	I	.	.	.	.	.	K	V	N	G	R	P	L	E	M	I	E	.	.	P	R	T	L	.	.	Q	Y	K	L	L	E	P	V	L	L	L	G	K	E	R	F	A	G	V	D	I	R	V	R	V	K	G	G	G	H	V	A	Q	I	Y	A	I	R	Q	S	I
Template Known Secondary structure		S										S	S	S			.	.	.	.	.			T	T							S	.	.	T	T	S		.	.		G	G	G	G						T	S	S		T	T	S	S									S	S
Template Predicted Secondary structure																	.	.	.	.	.												.	.					.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.			.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Q	L	V	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	A	L	V	A	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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