Job Description P76217 Confidence 100.00% Date Thu Jan 5 12:20:42 GMT 2012 Rank 16 Aligned Residues 468 % Identity 29% Template c2w8qA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	L	W	I	N	G	D	W	I	T	G	Q	G	A	S	R	V	K	R	N	P	V	S	G	E	V	L	W	Q	G	N	D	A	D	A	A	Q	V	E	Q	A	C	R	A	A	R	A	A	F	P	R	W	A	R	L	S	F	A	E	R	H	A	V	V	E	R	F	A	A	L	L	E	S	N	K	A	E	L	T
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		T	D	S	F	V	G	G	R	W	L	P	.	A	A	A	T	F	P	V	Q	D	P	A	S	G	A	A	L	G	M	V	A	D	C	G	V	R	E	A	R	A	A	V	R	A	A	Y	E	A	F	C	R	W	R	E	V	S	A	K	E	R	S	S	L	L	R	K	W	Y	N	L	M	I	Q	N	K	D	D	L	A
Template Known Secondary structure			S				T	T					.		S								T	T	T																														T	T	S																			T
Template Predicted Secondary structure													.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		A	I	I	A	R	E	T	G	K	P	R	W	E	A	A	T	E	V	T	A	M	I	N	K	I	A	I	S	I	K	A	Y	H	V	R	T	G	E	.	Q	R	S	E	M	P	D	G	A	A	S	L	R	H	R	P	H	G	V	L	A	V	F	G	P	Y	N	F	P	G	H	L	P	N	G	H	I	V	P	A	L
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		R	I	I	T	A	E	S	G	K	P	L	K	E	A	H	G	E	I	L	Y	S	A	F	F	L	E	W	F	S	E	E	A	R	R	V	Y	G	D	I	I	H	T	P	A	K	D	R	R	A	L	V	L	K	Q	P	I	G	V	A	A	V	I	T	P	W	N	F	P	S	A	M	I	T	R	K	V	G	A	A	L
Template Known Secondary structure																																	G	G	G									S		T	T																			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		L	A	G	N	T	I	I	F	K	P	S	E	L	T	P	W	S	G	E	A	V	M	R	L	W	Q	Q	A	G	L	P	P	G	V	L	N	L	V	Q	G	G	.	.	.	.	R	E	T	G	Q	A	L	S	A	L	E	D	L	D	G	L	L	F	T	G	S	A	N	T	G	Y	Q	L	H	R	Q	L	S	G	Q
Query Conservation																																											.	.	.	.
Alig confidence																																											.	.	.	.
Template Conservation
Template Sequence		A	A	G	C	T	V	V	V	K	P	A	E	D	T	P	F	S	A	L	A	L	A	E	L	A	S	Q	A	G	I	P	S	G	V	Y	N	V	I	P	C	S	R	K	N	A	K	E	V	G	E	A	I	C	T	D	P	L	V	S	K	I	S	F	T	G	S	T	T	T	G	K	I	L	L	H	H	A	A	N	S
Template Known Secondary structure				T									T	T	S															T			T	T	S																			T	T		T	T																						T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	K	I	L	A	L	E	M	G	G	N	N	P	L	I	I	D	E	V	A	D	I	D	A	A	V	H	L	T	I	Q	S	A	F	V	T	A	G	Q	R	C	T	C	A	R	R	L	L	L	K	S	G	A	Q	G	D	A	F	L	A	R	L	V	A	V	S	Q	R	L	T	P	G	N	W	D	D	E	P	Q
Query Conservation
Alig confidence		.																																																																													.
Template Conservation		.																																																																													.
Template Sequence		.	V	K	R	V	S	M	E	L	G	G	L	A	P	F	I	V	F	D	S	A	N	V	D	Q	A	V	A	G	A	M	A	S	K	F	R	N	T	G	Q	T	A	V	C	S	N	Q	F	L	V	Q	R	G	I	H	D	A	F	V	K	A	F	A	E	A	M	K	K	N	L	R	V	G	N	G	F	E	.	E	G
Template Known Secondary structure		.	T																	T	T	S															T	T	T	T		S	T	T	S																												B	S		T	T	S	.	T	T
Template Predicted Secondary structure		.																																																																													.
Template SS confidence
			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		P	F	I	G	G	L	I	S	E	Q	A	A	Q	Q	V	V	T	A	W	Q	Q	L	E	A	M	G	G	R	P	L	L	A	P	R	L	L	Q	A	G	T	S	L	L	T	P	G	I	I	.	E	M	T	G	V	A	G	V	P	D	E	E	V	F	G	P	L	L	R	V	W	R	Y	D	T	F	D	E	A	I	R
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		T	T	Q	G	P	L	I	N	E	K	A	V	E	K	V	E	K	Q	V	N	D	A	V	S	K	G	A	T	V	V	T	G	G	K	R	H	Q	L	G	K	N	F	F	E	P	T	L	L	C	N	V	T	Q	D	M	L	C	T	H	E	E	T	F	G	P	L	A	P	V	I	K	F	D	T	E	E	E	A	I	A
Template Known Secondary structure				B				S	S																T	T	T								S	B		T	T		T	T		B							S			G	G	G	G	T	T		T	T			S	S								S
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	N	N	T	R	F	G	L	S	C	G	L	V	S	P	E	R	E	K	F	D	Q	L	L	L	E	A	R	A	G	I	V	N	W	N	K	P	L	T	G	A	A	S	T	A	P	F	G	G	I	G	A	S	G	N	H	R	P	S	A	W	Y	A	A	D	Y	C	A	W	P	M	A	S	L	E	S	D
Query Conservation
Alig confidence																																												.
Template Conservation																																												.
Template Sequence		I	A	N	A	A	D	V	G	L	A	G	Y	F	Y	S	Q	D	P	A	Q	I	W	R	V	A	E	Q	L	E	V	G	M	V	G	V	N	E	G	L	I	S	S	.	V	E	C	P	F	G	G	V	K	Q	S	G	L	G	R	E	G	S	K	Y	G	I	D	E	Y	L	E	L	K	Y	V	C	Y	G	G
Template Known Secondary structure				T		S	S			S																			S		S	S					S		S					.	T	T	S		B			S	G	G	G			S		B	S	T	T	T	G	G	G	G	G
Template Predicted Secondary structure																																												.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.